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Packages list

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A3Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
abbyyRAccess to Abbyy Optical Character Recognition (OCR) API
abcTools for Approximate Bayesian Computation (ABC)
ABCanalysisComputed ABC Analysis
abc.dataData Only: Tools for Approximate Bayesian Computation (ABC)
abcdeFBAABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package
ABCoptimImplementation of Artificial Bee Colony (ABC) Optimization
ABCp2Approximate Bayesian Computational Model for Estimating P2
abcrfApproximate Bayesian Computation via Random Forests
abctoolsTools for ABC Analyses
abdThe Analysis of Biological Data
abf2Load Gap-Free Axon ABF2 Files
ABHgenotypeREasy Visualization of ABH Genotypes
abindCombine Multidimensional Arrays
abnModelling Multivariate Data with Additive Bayesian Networks
abodOutlierAngle-Based Outlier Detection
AbsFilterGSEAImproved False Positive Control of Gene-Permuting GSEA with Absolute Filtering
abundantAbundant regression and high-dimensional principal fitted components
ACAAbrupt Change-Point or Aberration Detection in Point Series
accFunctions for Processing and Analyzing Accelerometer Data
accelerometryFunctions for Processing Minute-to-Minute Accelerometer Data
accelmissingMissing Value Imputation for Accelerometer Data
AcceptanceSamplingCreation and Evaluation of Acceptance Sampling Plans
ACCLMAACC & LMA Graph Plotting
accrualBayesian Accrual Prediction
accruedData Quality Visualization Tools for Partially Accruing Data
ACDCategorical data analysis with complete or missing responses
ACDmTools for Autoregressive Conditional Duration Models
acepackace() and avas() for selecting regression transformations
ACEtEstimating Dynamic Heritability and Twin Model Comparison
acidAnalysing Conditional Income Distributions
acm4rAlign-and-Count Method comparisons of RFLP data
acmeRImplements ACME Estimator of Bird and Bat Mortality by Wind Turbines
ACNEAffymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
acnrAnnotated Copy-Number Regions
acopulaModelling dependence with multivariate Archimax (or any user-defined continuous) copulas
acpAutoregressive Conditional Poisson
aCRMConvenience functions for analytical Customer Relationship Management
acsDownload, Manipulate, and Present American Community Survey and Decennial Data from the US Census
ACSNMineRGene Enrichment Analysis from ACSN Maps or GMT Files
acssAlgorithmic Complexity for Short Strings
acss.dataData Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
ACSWRA Companion Package for the Book "A Course in Statistics with R"
ACTCDAsymptotic Classification Theory for Cognitive Diagnosis
ActigraphyActigraphy Data Analysis
activityAnimal Activity Statistics
activpalProcessingProcess activPAL Events Files
actuarActuarial Functions and Heavy Tailed Distributions
ActuDistnsFunctions for actuarial scientists
adaThe R Package Ada for Stochastic Boosting
adabagApplies Multiclass AdaBoost.M1, SAMME and Bagging
adagioDiscrete and Global Optimization Routines
AdapEnetClassA Class of Adaptive Elastic Net Methods for Censored Data
adaptDAAdaptive Mixture Discriminant Analysis
AdaptFitAdaptive Semiparametic Regression
AdaptFitOSAdaptive Semiparametric Regression with Simultaneous Confidence Bands
AdaptGaussGaussian Mixture Models (GMM)
AdaptiveSparsityAdaptive Sparsity Models
adaptivetauTau-leaping stochastic simulation
adaptMCMCImplementation of a generic adaptive Monte Carlo Markov Chain sampler
adaptsmoFMRIAdaptive Smoothing of FMRI Data
adaptTestAdaptive two-stage tests
addhazBinomial and Multinomial Additive Hazards Models
addhazardFit Additive Hazards Models for Survival Analysis
addinslistDiscover and Install Useful RStudio Addins
additivityTestsAdditivity Tests in the Two Way Anova with Single Sub-class Numbers
addregAdditive Regression for Discrete Data
ADDTA Package for Analysis of Accelerated Destructive Degradation Test Data
ade4Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
ade4TkGUI'ade4' Tcl/Tk Graphical User Interface
adegenetExploratory Analysis of Genetic and Genomic Data
adegraphicsAn S4 Lattice-Based Package for the Representation of Multivariate Data
adehabitatAnalysis of Habitat Selection by Animals
adehabitatHRHome Range Estimation
adehabitatHSAnalysis of Habitat Selection by Animals
adehabitatLTAnalysis of Animal Movements
adehabitatMATools to Deal with Raster Maps
adephyloadephylo: exploratory analyses for the phylogenetic comparative method
AdequacyModelAdequacy of Probabilistic Models and General Purpose Optimization
adespatialMultivariate Multiscale Spatial Analysis
ADGofTestAnderson-Darling GoF test
adhoccalculate ad hoc distance thresholds for DNA barcoding identification
adimproAdaptive Smoothing of Digital Images
adliftAn adaptive lifting scheme algorithm
ADM3An Interpretation of the ADM method - automated detection algorithm
AdMitAdaptive Mixture of Student-t distributions
admixturegraphAdmixture Graph Manipulation and Fitting
ADMMnetRegularized Model with Selecting the Number of Non-Zeros
ADPclustFast Clustering Using Adaptive Density Peak Detection
adsSpatial point patterns analysis
AdvBinomAppsUpper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
adwaveWavelet Analysis of Genomic Data from Admixed Populations
AEDForecastingChange Point Analysis in ARIMA Forecasting
aemoDownload and process AEMO price and demand data
AERApplied Econometrics with R
AFModel-Based Estimation of Confounder-Adjusted Attributable Fractions
afexAnalysis of Factorial Experiments
AFLPsimHybrid Simulation and Genome Scan for Dominant Markers
AFMAtomic Force Microscope Image Analysis
afterRun Code in the Background
aftgeeAccelerated Failure Time Model with Generalized Estimating Equations
AGDAnalysis of Growth Data
AggregateRAggregate Numeric, Date and Categorical Variables by an ID
agopAggregation Operators and Preordered Sets
agReeVarious Methods for Measuring Agreement
AgreementStatistical Tools for Measuring Agreement
agricolaeStatistical Procedures for Agricultural Research
agridatAgricultural Datasets
agrmtCalculate Agreement or Consensus in Ordered Rating Scales
AGSDestEstimation in Adaptive Group Sequential Trials
agsemiscMiscellaneous plotting and utility functions
ahazRegularization for semiparametric additive hazards regression
ahpAnalytic Hierarchy Process
AHREstimation and Testing of Average Hazard Ratios
AICcmodavgModel Selection and Multimodel Inference Based on (Q)AIC(c)
AIDEstimation of Box-Cox Power Transformation Parameter
aidarTools for reading AIDA ( files into R
AIMAIM: adaptive index model
aimPlotCreate Pie Like Plot for Completeness
AkeAssociated Kernel Estimations
akimaInterpolation of Irregularly and Regularly Spaced Data
akmeansAdaptive Kmeans algorithm based on threshold
alabamaConstrained Nonlinear Optimization
alakazamImmunoglobulin Clonal Lineage and Diversity Analysis
aldThe Asymmetric Laplace Distribution
ALDqrQuantile Regression Using Asymmetric Laplace Distribution
aLFQEstimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
AlgDesignAlgorithmic Experimental Design
AlgebraicHaploPackageHaplotype Two Snips Out of a Paired Group of Patients
algstatAlgebraic statistics in R
AlignStatComparison of Alternative Multiple Sequence Alignments
alineRAlignment of Phonetic Sequences Using the 'ALINE' Algorithm
ALKrGenerate Age-Length Keys for fish populations
allanAutomated Large Linear Analysis Node
allanvarAllan Variance Analysis
alleHapAllele Imputation and Haplotype Reconstruction from Pedigree Databases
allelematchIdentifying unique multilocus genotypes where genotyping error and missing data may be present
AlleleRetainAllele Retention, Inbreeding, and Demography
allelicA fast, unbiased and exact allelic exact test
AllPossibleSpellingsComputes all of a word's possible spellings
almR Client for the Lagotto Altmetrics Platform
alphahullGeneralization of the Convex Hull of a Sample of Points in the Plane
alphaOutlierObtain Alpha-Outlier Regions for Well-Known Probability Distributions
alphashape3dImplementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
alr3Data to accompany Applied Linear Regression 3rd edition
alr4Data to accompany Applied Linear Regression 4rd edition
ALSMultivariate Curve Resolution Alternating Least Squares (MCR-ALS)
ALSCPCAccelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form
altmetaAlternative Meta-Analysis Methods
ALToptOptimal Experimental Designs for Accelerated Life Testing
amapAnother Multidimensional Analysis Package
AMAP.SeqCompare Gene Expressions from 2-Treatment RNA-Seq Experiments
AMCPA Multiple Comparison Perspective
amecoEuropean Commission Annual Macro-Economic (AMECO) Database
ameiAdaptive Management of Epidemiological Interventions
AmeliaA Program for Missing Data
amenAdditive and Multiplicative Effects Models for Networks and Relational Data
AmericanCallOptThis package includes pricing function for selected American call options with underlying assets that generate payouts
AMGETPost-processing tool for ADAPT 5
amlAdaptive Mixed LASSO
AMOEBAA Multidirectional Optimum Ecotope-Based Algorithm
AMOREA MORE flexible neural network package
AmostraBrasilGenerates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps
AmpliconDuoStatistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
anacorSimple and Canonical Correspondence Analysis
analogseaInterface to 'Digital Ocean'
analogueAnalogue and Weighted Averaging Methods for Palaeoecology
analogueExtraAdditional Functions for Use with the Analogue Package
analyzModel Layer for Automatic Data Analysis via CSV File Interpretation
AnalyzeFMRIFunctions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format
AnalyzeTSAnalyze (Fuzzy) Time Series
anapuceTools for microarray data analysis
AncestryMapperAssigning Ancestry Based on Population References
anchorsStatistical analysis of surveys with anchoring vignettes
AnDEAn extended Bayesian Learning Technique developed by Dr. Geoff Webb
andrewsAndrews curves
anesrakeANES Raking Implementation
anfisAdaptive Neuro Fuzzy Inference System in R
AnglerCreelSurveySimulationSimulate a Bus Route Creel Survey of Anglers
animalTrackAnimal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data
animationA Gallery of Animations in Statistics and Utilities to Create Animations
anim.plotsSimple Animated Plots For R
ANLPBuild Text Prediction Model
AnnotListsAnnotLists: A tool to annotate multiple lists from a specific annotation file
anointAnalysis of Interactions
ANOMAnalysis of Means
anominatealpha-NOMINATE Ideal Point Estimator
anonymizerAnonymize Data Containing Personally Identifiable Information
AnthropMMDA GUI for Mean Measures of Divergence
AnthropometryStatistical Methods for Anthropometric Data
antitrustTools for Antitrust Practitioners
AntWebprogrammatic interface to the AntWeb
aodAnalysis of Overdispersed Data
aods3Analysis of Overdispersed Data using S3 methods
aoosAnother Object Orientation System
aopAdverse Outcome Pathway Analysis
aoristicaoristic analysis with spatial output (kml)
ApacheLogProcessorProcess the Apache Web Server Log Combined Files
apaStyleGenerate APA Tables for MS Word
apaTablesCreate American Psychological Association (APA) Style Tables
apcAge-Period-Cohort Analysis
apclusterAffinity Propagation Clustering
apeAnalyses of Phylogenetics and Evolution
apexPhylogenetic Methods for Multiple Gene Data
aplore3Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd ed.)
aplpackAnother Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
apmsWAPPPre- and Postprocessing for AP-MS data analysis based on spectral counts
appellCompute Appell's F1 hypergeometric function
appleApproximate Path for Penalized Likelihood Estimators
AppliedPredictiveModelingFunctions and Data Sets for 'Applied Predictive Modeling'
appnnAmyloid Propensity Prediction Neural Network
approximatorBayesian prediction of complex computer codes
aprean3Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998)
apricomTools for the a Priori Comparison of Regression Modelling Strategies
aprofAmdahl's Profiler, Directed Optimization Made Easy
APSIMGeneral Utility Functions for the 'Agricultural Production Systems Simulator'
APSIMBatchAnalysis the output of Apsim software
apsimrEdit, Run and Evaluate APSIM Simulations Easily Using R
apsrtableapsrtable model-output formatter for social science
aptAsymmetric Price Transmission
APtoolsAverage Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times
apTreeshapeAnalyses of Phylogenetic Treeshape
aqfigFunctions to help display air quality model output and monitoring data
aqpAlgorithms for Quantitative Pedology
aqrInterface methods to use with an ActiveQuant Master Server
AquaEnvAquaEnv - an integrated development toolbox for aquatic chemical model generation
AR1segSegmentation of an autoregressive Gaussian process of order 1
arabicStemRArabic Stemmer for Text Analysis
ArArReduxRigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data
ARCensRegFitting Univariate Censored Linear Regression Model with Autoregressive Errors
archdataExample Datasets from Archaeological Research
archetypesArchetypal Analysis
archiDARTPlant Root System Architecture Analysis Using DART and RSML Files
archivistTools for Storing, Restoring and Searching for R Objects
archivist.githubTools for Archiving, Managing and Sharing R Objects via GitHub
ArDecTime series autoregressive-based decomposition
arf3DS4Activated Region Fitting, fMRI data analysis (3D)
arfimaFractional ARIMA (and Other Long Memory) Time Series Modeling
ArfimaMLMArfima-MLM Estimation For Repeated Cross-Sectional Data
argosfilterArgos locations filter
argparseCommand line optional and positional argument parser
argparserCommand-Line Argument Parser
ArgumentCheckImproved Communication to Users with Respect to Problems in Function Arguments
armData Analysis Using Regression and Multilevel/Hierarchical Models
arnie"Arnie" box office records 1982-2014
aroma.affymetrixAnalysis of Large Affymetrix Microarray Data Sets
aroma.apdA Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]
aroma.cnCopy-Number Analysis of Large Microarray Data Sets
aroma.coreCore Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
ARPobservationTools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes
aRpsDCAArps Decline Curve Analysis in R
arrApplyApply a Function to a Margin of an Array
ArrayBinBinarization of numeric data arrays
arrayhelpersConvenience Functions for Arrays
arsAdaptive Rejection Sampling
ARTAligned Rank Transform for Nonparametric Factorial Analysis
artfimaARTFIMA Model Estimation
ARTIVATime-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
ARToolAligned Rank Transform
ARTPGene and Pathway p-values computed using the Adaptive Rank Truncated Product
ARTP2Pathway and Gene-Level Association Test
arulesMining Association Rules and Frequent Itemsets
arulesNBMinerMining NB-Frequent Itemsets and NB-Precise Rules
arulesSequencesMining Frequent Sequences
arulesVizVisualizing Association Rules and Frequent Itemsets
aRxivInterface to the arXiv API
asaurData Sets for "Applied Survival Analysis Using R""
asbioA Collection of Statistical Tools for Biologists
asciiExport R objects to several markup languages
as.colorAssign Random Colors to Unique Items in a Vector
asdSimulations for Adaptive Seamless Designs
asdreaderReading ASD Binary Files in R
ashDavid Scott's ASH Routines
ashtApplied Statistical Hypothesis Tests
AsioHeaders'Asio' C++ Header Files
ASMapLinkage Map Construction using the MSTmap Algorithm
asnipeAnimal Social Network Inference and Permutations for Ecologists
aspaceA collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
ASPBayBayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data
aspectA General Framework for Multivariate Analysis with Optimal Scaling
aSPUAdaptive Sum of Powered Score Test
asremlPlusAugments the Use of 'Asreml' in Fitting Mixed Models
assertiveReadable Check Functions to Ensure Code Integrity
assertive.baseA Lightweight Core of the 'assertive' Package
assertive.codeAssertions to Check Properties of Code
assertive.dataAssertions to Check Properties of Data to Check Properties of Strings to Check Properties of Strings
assertive.datetimesAssertions to Check Properties of Dates and Times
assertive.filesAssertions to Check Properties of Files
assertive.matricesAssertions to Check Properties of Matrices
assertive.modelsAssertions to Check Properties of Models
assertive.numbersAssertions to Check Properties of Numbers
assertive.propertiesAssertions to Check Properties of Variables
assertive.reflectionAssertions for Checking the State of R
assertive.setsAssertions to Check Properties of Sets
assertive.stringsAssertions to Check Properties of Strings
assertive.typesAssertions to Check Types of Variables
assertrAssertive Programming for R Analysis Pipelines
assertthatEasy pre and post assertions
AssetPricingOptimal pricing of assets with fixed expiry date
assistA Suite of R Functions Implementing Spline Smoothing Techniques
ASSISTantAdaptive Subgroup Selection in Group Sequential Trials
AssocTestsGenetic Association Studies
assortnetCalculate the Assortativity Coefficient of Weighted and Binary Networks
AssotesteRStatistical Tests for Genetic Association Studies
asterAster Models
aster2Aster Models
astroAstronomy Functions, Tools and Routines
astrochronA Computational Tool for Astrochronology
astrodatRAstronomical Data
astroFnsAstronomy: time and position functions, misc. utilities
astrolibRAstronomy Users Library
astsaApplied Statistical Time Series Analysis
asVPCAverage Shifted Visual Predictive Checks
asymLDAsymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
asymmetryThe Slide-Vector Model for Multidimensional Scaling of Asymmetric Data
asympTestAsymptotic statistic
AsynchLongRegression Analysis of Sparse Asynchronous Longitudinal Data
asypowCalculate Power Utilizing Asymptotic Likelihood Ratio Methods
ATEInference for Average Treatment Effects using Covariate Balancing
AtelieRA GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests
atmcmcAutomatically Tuned Markov Chain Monte Carlo
ATmetAdvanced Tools for Metrology
AtmRayAcoustic Traveltime Calculations for 1-D Atmospheric Models
aTSAAlternative Time Series Analysis
atsdSupport Querying Axibase Time-Series Database
attribriskPopulation Attributable Risk
AUCThreshold independent performance measures for probabilistic classifiers
aucmAUC Maximization
AUCRFVariable Selection with Random Forest and the Area Under the Curve
audioAudio Interface for R
audiolyzRaudiolyzR: Give your data a listen
auditBounds for Accounting Populations
auRocVarious Methods to Estimate the AUC
AUtestsApproximate Unconditional and Permutation Tests
autoencoderSparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data
autoimageEnhanced Image Plots
automapAutomatic interpolation package
AutoModelAutomated Hierarchical Multiple Regression with Assumptions Checking
autoplsPartial Least Squares Regression with Backward Selection of Predictors
AutoregressionMDEMinimum Distance Estimation in Autoregressive Model
AutoSEARCHGeneral-to-Specific (GETS) Modelling
autoSEMPerforms Specification Search in Structural Equation Models
autovarCoreAutomated Vector Autoregression Models and Networks
averiskCalculation of Average Population Attributable Fractions and Confidence Intervals
awsAdaptive Weights Smoothing
aws.alexaClient for the Amazon Alexa Web Information Services API
awsMethodsClass and Methods Definitions for Packages 'aws', 'adimpro', 'fmri' and 'dti'
aws.signatureAmazon Web Services Request Signatures
aylmerA generalization of Fisher's exact test
AzureMLInterface with Azure Machine Learning Datasets, Experiments and Web Services
B2ZBayesian Two-Zone Model
b6e6rlAdaptive differential evolution, b6e6rl variant
babarBayesian Bacterial Growth Curve Analysis in R
babelRibosome Profiling Data Analysis
BaBooNBayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data
babynamesUS Baby Names 1880-2014
BACABubble Chart to Compare Biological Annotations by using DAVID
BacArenaModeling Framework for Cellular Communities in their Environments
BACCOBayesian Analysis of Computer Code Output (BACCO)
BACCTBayesian Augmented Control for Clinical Trials
backblazerBindings to the Backblaze B2 API
backpipeBackward Pipe Operator
backportsReimplementations of Functions Introduced Since R-3.0.0
backShiftLearning Causal Cyclic Graphs from Unknown Shift Interventions
backtestExploring Portfolio-Based Conjectures About Financial Instruments
backtestGraphicsInteractive Graphics for Portfolio Data
BACpriorChoice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm
bacrBayesian Adjustment for Confounding
badgecreatrCreate Badges for 'Travis', 'Repostatus' '' Etc in Github Readme
BAEssdBayesian Average Error approach to Sample Size Determination
BagidisBAses GIving DIStances
bagRboostREnsemble bagging and boosting classifiers
BalancedSamplingBalanced and Spatially Balanced Sampling
BaMFunctions and Datasets for Books by Jeff Gill
bamditBayesian Meta-Analysis of Diagnostic Test Data
BAMMtoolsAnalysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
banditFunctions for simple A/B split test and multi-armed bandit analysis
BANFFBayesian Network Feature Finder
BANOVAHierarchical Bayesian ANOVA Models
bapredBatch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data)
BaPreStoProBayesian Prediction of Stochastic Processes
barcodeBarcode distribution plots
BarcodingRSpecies Identification using DNA Barcodes
BarnardBarnard's Unconditional Test
bartMachineBayesian Additive Regression Trees
bartMachineJARsbartMachine JARs
BASBayesian Model Averaging using Bayesian Adaptive Sampling
base64Base64 Encoder and Decoder
base64encTools for base64 encoding
basefunInfrastructure for Computing with Basis Functions
baselineBaseline Correction of Spectra
basicspaceRecovering a Basic Space from Issue Scales
BASIXBASIX: An efficient C/C++ toolset for R
BaSTAAge-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data
bastahBig Data Statistical Analysis for High-Dimensional Models
BATBiodiversity Assessment Tools
batadeHTML reports and so on
batchBatching Routines in Parallel and Passing Command-Line Arguments to R
BatchExperimentsStatistical Experiments on Batch Computing Clusters
BatchJobsBatch Computing with R
batchmeansConsistent Batch Means Estimation of Monte Carlo Standard Errors
batmanConvert Categorical Representations of Logicals to Actual Logicals
batteryreductionAn R Package for Data Reduction by Battery Reduction
BayClone2Bayesian Feature Allocation Model for Tumor Heterogeneity
BayesBDBayesian Boundary Detection in Images
BayesBinMixBayesian Estimation of Mixtures of Multivariate Bernoulli Distributions
bayesbioMiscellaneous Functions for Bioinformatics and Bayesian Statistics
bayesbootAn Implementation of Rubin's (1981) Bayesian Bootstrap
BayesBridgeBridge Regression
BayesCommBayesian Community Ecology Analysis
bayescountPower Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
BayesCRBayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions
BayesDAFunctions and Datasets for the book "Bayesian Data Analysis"
bayesDccGarchThe Bayesian Dynamic Conditional Correlation GARCH Model
bayesDemGraphical User Interface for bayesTFR, bayesLife and bayesPop
BayesFactorComputation of Bayes Factors for Common Designs
bayesGARCHBayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
bayesGDSScalable Rejection Sampling for Bayesian Hierarchical Models
BayesGESMBayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models
BayesHBayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior
BayesianAnimalTrackerBayesian Melding of GPS and DR Path for Animal Tracking
BayesianbetaregBayesian Beta regression: joint mean and precision modeling
BayesianNetworkBayesian Network Modeling and Analysis
BayesLCABayesian Latent Class Analysis
bayesLifeBayesian Projection of Life Expectancy
BayesLogitLogistic Regression
bayesmBayesian Inference for Marketing/Micro-Econometrics
BayesMAMSDesigning Bayesian Multi-Arm Multi-Stage Studies
bayesMCClustMixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
BayesMedDefault Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation
bayesmetaBayesian Random-Effects Meta-Analysis
bayesmixBayesian Mixture Models with JAGS
BayesMixSurvBayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification
BayesNIBayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
bayesPopProbabilistic Population Projection
bayesprefHierarchical Bayesian analysis of ecological count data
bayesQRBayesian quantile regression
bayessBayesian Essentials with R
BayesSAEBayesian Analysis of Small Area Estimation
BayesSingleSubComputation of Bayes factors for interrupted time-series designs
BayesSummaryStatLMMCMC Sampling of Bayesian Linear Models via Summary Statistics
bayesSurvBayesian Survival Regression with Flexible Error and Random Effects Distributions
bayesTFRBayesian Fertility Projection
BayesthreshBayesian thresholds mixed-effects models for categorical data
BayesTreeBayesian Additive Regression Trees
BayesTreePriorBayesian Tree Prior Simulation
BayesValidateBayesValidate Package
BayesVarSelBayes Factors, Model Choice and Variable Selection in Linear Models
BayesXR Utilities Accompanying the Software Package BayesX
BayesXsrcR Package Distribution of the BayesX C++ Sources
BayHapBayesian analysis of haplotype association using Markov Chain Monte Carlo
BayHazR Functions for Bayesian Hazard Rate Estimation
BaylorEdPsychR Package for Baylor University Educational Psychology Quantitative Courses
bayouBayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
BaySICBayesian Analysis of Significantly Mutated Genes in Cancer
BAYSTAROn Bayesian analysis of Threshold autoregressive model (BAYSTAR)
BBSolving and Optimizing Large-Scale Nonlinear Systems
bbefkrBayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density
bbemkrBayesian bandwidth estimation for multivariate kernel regression with Gaussian error
BBESTBayesian Estimation of Incoherent Neutron Scattering Backgrounds
BBmiscMiscellaneous Helper Functions for B. Bischl
bbmleTools for General Maximum Likelihood Estimation
BBMMBrownian bridge movement model
bboBiogeography-Based Optimization
BBRecaptureBayesian Behavioural Capture-Recapture Models
bc3netGene Regulatory Network Inference with Bc3net
BCABusiness and Customer Analytics
BCBCSFBias-Corrected Bayesian Classification with Selected Features
BCDatingBusiness Cycle Dating and Plotting Tools
BcDiagDiagnostics Plots for Bicluster Data
BCEBayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
BCEABayesian Cost Effectiveness Analysis
BCEEThe Bayesian Causal Effect Estimation Algorithm
BCEs0Bayesian Models for Cost-Effectiveness Analysis in the Presence of Structural Zero Costs
BchronRadiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling
BclimBayesian Palaeoclimate Reconstruction from Pollen Data
bclustBayesian Hierarchical Clustering Using Spike and Slab Models
bcpBayesian Analysis of Change Point Problems
bcpaBehavioral change point analysis of animal movement
bcpmetaBayesian Multiple Changepoint Detection Using Metadata
BCRABreast Cancer Risk Assessment
bcRepAdvanced Analysis of B Cell Receptor Repertoire Data
bcrmBayesian Continual Reassessment Method for Phase I Dose-Escalation Trials
bcrypt'Blowfish' Password Hashing Algorithm
bcvCross-Validation for the SVD (Bi-Cross-Validation)
bdaDensity Estimation for Grouped Data
bdeBounded Density Estimation
BDgraphBayesian Graph Selection Based on Birth-Death MCMC Approach
bdotsBootstrapped Differences of Time Series
bdpoptOptimisation of Bayesian Decision Problems
bdpvInference and design for predictive values in binary diagnostic tests
bdriftBeta Drift Analysis
bdscaleRemove Weekends and Holidays from ggplot2 Axes
bdsmatrixRoutines for Block Diagonal Symmetric matrices
bdvisBiodiversity Data Visualizations
BDWregBayesian Inference for Discrete Weibull Regression
bdynsysBayesian Dynamical System Model
beadarrayFilterBead filtering for Illumina bead arrays
beadarrayMSVAnalysis of Illumina BeadArray SNP data including MSV markers
beanplotVisualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
BEANSPBayesian Estimate of Age-specific Nest Survival Probabilities
beanzBayesian Analysis of Heterogeneous Treatment Effect
BEDASSLEQuantifies effects of geo/eco distance on genetic differentiation
BEDMatrixMatrices Backed by Binary PED Files (PLINK)
bedrGenomic Region Processing using Tools Such as Bedtools, Bedops and Tabix
beeprEasily Play Notification Sounds on any Platform
beeswarmThe Bee Swarm Plot, an Alternative to Stripchart
benchden28 benchmark densities from Berlinet/Devroye (1994)
benchmarkBenchmark Experiments Toolbox
BenchmarkingBenchmark and Frontier Analysis Using DEA and SFA
benchmarkmeCrowd Sourced System Benchmarks
benchmarkmeDataData Set for the 'benchmarkme' Package
benford.analysisBenford Analysis for Data Validation and Forensic Analytics
BenfordTestsStatistical Tests for Evaluating Conformity to Benford's Law
bentcableARBent-Cable Regression for Independent Data or Autoregressive Time Series
BEQI2Benthic Ecosystem Quality Index 2
berBatch Effects Removal
BergmBayesian analysis for exponential random graph models
berryFunctionsFunction Collection Related to Plotting and Hydrology
BesselBessel – Bessel Functions Computations and Approximations
BESTBayesian Estimation Supersedes the t-Test
bestglmBest Subset GLM
BetaBitMini Games from Adventures of Beta and Bit
betafamDetecting rare variants for quantitative traits using nuclear families
betalinkBeta-Diversity of Species Interactions
betapartPartitioning beta diversity into turnover and nestedness components
betaperFunctions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
betaregBeta Regression
betasStandardized Beta Coefficients
betategarchSimulation, estimation and forecasting of Beta-Skew-t-EGARCH models
bethelBethel's algorithm
BeviMedBayesian Evaluation of Variant Involvement in Mendelian Disorders
bezierBezier Curve and Spline Toolkit
bfaBayesian Factor Analysis
bfastBreaks For Additive Season and Trend (BFAST)
bforkBasic Unix Process Control
bfpBayesian Fractional Polynomials
bgevaBinary Generalized Extreme Value Additive Models
bglmBayesian Estimation in Generalized Linear Models
BGLRBayesian Generalized Linear Regression
bgmfilesExample BGM Files for the Atlantis Ecosystem Model
bgmmGaussian Mixture Modeling Algorithms And The Belief-based Mixture Modeling
BGPhazardMarkov Beta and Gamma Processes for Modeling Hazard Rates
BGSIMDBlock Gibbs Sampler with Incomplete Multinomial Distribution
BHBoost C++ Header Files
BhatGeneral likelihood exploration
BHH2Useful Functions for Box, Hunter and Hunter II
biasbetaregBias correction of the parameter estimates of the beta regression model
BiasedUrnBiased Urn Model Distributions
bibliometrixBibliometric and Co-Citation Analysis Tool
bibliospecReading Mass Spectrometric Search Results
bibtexbibtex parser
biclustBiCluster Algorithms
BiDimRegressionCalculates the bidimensional regression between two 2D configurations
bifactorialInferences for bi- and trifactorial trial designs
BIFIEsurveyTools for Survey Statistics in Educational Assessment
bigalgebraBLAS routines for native R matrices and big.matrix objects
biganalyticsUtilities for 'big.matrix' Objects from Package 'bigmemory'
bigdataBig Data Analytics
BIGDAWGCase-Control Analysis of Multi-Allelic Loci
bigGPDistributed Gaussian Process Calculations
biglarsScalable Least-Angle Regression and Lasso
biglassoBig Lasso: Extending Lasso Model Fitting to Big Data in R
biglmbounded memory linear and generalized linear models
bigmemoryManage Massive Matrices with Shared Memory and Memory-Mapped Files
bigmemory.sriA shared resource interface for Bigmemory Project packages
bigmlBindings for the BigML API
bigpcaPCA, Transpose and Multicore Functionality for 'big.matrix' Objects
bigQueryRInterface with Google BigQuery with Shiny Compatibility
BigQuicBig Quadratic Inverse Covariance Estimation
bigRegGeneralized Linear Models (GLM) for Large Data Sets
bigrqueryAn Interface to Google's 'BigQuery' 'API'
bigRRGeneralized Ridge Regression (with special advantage for p >> n cases)
bigsplinesSmoothing Splines for Large Samples
bigtabulateTable, Apply, and Split Functionality for Matrix and 'big.matrix' Objects
BigTSPTop Scoring Pair based methods for classification
BigVARDimension Reduction Methods for Multivariate Time Series
bildBInary Longitudinal Data
bimetallicPower for SNP analyses using silver standard cases
bimixtEstimates Mixture Models for Case-Control Data
BinarizeBinarization of One-Dimensional Data
BinaryEMVSVariable Selection for Binary Data Using the EM Algorithm
BinaryEPPMMean and Variance Modeling of Binary Data
binaryLogicBinary Logic
bindaMulti-Class Discriminant Analysis using Binary Predictors
bindataGeneration of Artificial Binary Data
binequalityMethods for Analyzing Binned Income Data
bingatBinary Graph Analysis Tools
binGroupEvaluation and experimental design for binomial group testing
binhfHaar-Fisz functions for binomial data
binMtoAsymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
BinNonNorData Generation with Binary and Continuous Non-Normal Components
BinNorSimultaneous Generation of Multivariate Binary and Normal Variates
binomBinomial Confidence Intervals For Several Parameterizations
binomen'Taxonomic' Specification and Parsing Methods
binomialcftpGenerates binomial random numbers via the coupling from the past algorithm
binomlogitEfficient MCMC for Binomial Logit Models
binomSamSizeConfidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
binomToolsPerforming diagnostics on binomial regression models
BinOrdNonNorConcurrent Generation of Binary, Ordinal and Continuous Data
binrCut Numeric Values into Evenly Distributed Groups
binseqtestExact Binary Sequential Designs and Analysis
binstData Preprocessing, Binning for Classification and Regression
bio3dBiological Structure Analysis
BiocombFeature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
BiodemBiodemography Functions
BiodiversityRPackage for Community Ecology and Suitability Analysis
BIOdryMultilevel Modeling of Dendroclimatical Fluctuations
BioFTFBiodiversity Assessment Using Functional Tools
biogasProcess Biogas Data and Predict Biogas Production
biogeoPoint Data Quality Assessment and Coordinate Conversion
BioGeoBEARSBioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
biogramN-Gram Analysis of Biological Sequences
BiographExplore Life Histories
bioinactivationSimulation of Dynamic Microbial Inactivation
bio.inferPredict environmental conditions from biological observations
biomAn interface package (beta) for the BIOM file format
BioMarkFind Biomarkers in Two-Class Discrimination Problems
biomartrFunctional Annotation and Biological Data Retrieval with R
biomod2Ensemble Platform for Species Distribution Modeling
BIOM.utilsUtilities for the BIOM (Biological Observation Matrix) Format
bionetdataBiological and chemical data networks
BioPETBiomarker Prognostic Enrichment Tool
bioplotsVisualization of Overlapping Results with Heatmap
bioPNSimulation of deterministic and stochastic biochemical reaction networks using Petri Nets
biorxivrSearch and Download Papers from the bioRxiv Preprint Server
bios2mdsFrom BIOlogical Sequences to MultiDimensional Scaling
biosignalEMGTools for Electromyogram Signals (EMG) Analysis
BioStatRInitiation à la Statistique avec R
bioticCalculation of Freshwater Biotic Indices
biotoolsTools for Biometry and Applied Statistics in Agricultural Science
bipartiteVisualising Bipartite Networks and Calculating Some (Ecological) Indices
biplotbootGUIBootstrap on Classical Biplots and Clustering Disjoint Biplot
BiplotGUIInteractive Biplots in R
BIPODBIPOD (Bayesian Inference for Partially Observed diffusions)
birdringMethods to Analyse Ring Re-Encounter Data
birkMA Birk's Functions
bisectrTools to find bad commits with git bisect
BiSEpToolkit to Identify Candidate Synthetic Lethality
bisoregBayesian Isotonic Regression with Bernstein Polynomials
bitA class for vectors of 1-bit booleans
bit64A S3 Class for Vectors of 64bit Integers
bitopsBitwise Operations
BiTrinABinarization and Trinarization of One-Dimensional Data
bitrugsBayesian Inference of Transmission Routes Using Genome Sequences
BivarPEstimating the Parameters of Some Bivariate Distributions
bivarRIpowerSample size calculations for bivariate longitudinal data
biwaveletConduct Univariate and Bivariate Wavelet Analyses
biwtFunctions to compute the biweight mean vector and covariance & correlation matrices
bizdaysBusiness Days Calculations and Utilities
bkmrBayesian Kernel Machine Regression
BKPCBayesian Kernel Projection Classifier
blackboxBlack Box Optimization and Exploration of Parameter Space
BlakerCIBlaker's Binomial Confidence Limits
BlandAltmanLehPlots (Slightly Extended) Bland-Altman Plots
blatrSend Emails Using 'Blat' for Windows
BlaunetCalculate and Analyze Blau Status for Measuring Social Distance
blavaanBayesian Latent Variable Analysis
BLCOPBlack-Litterman and Copula Opinion Pooling Frameworks
blendedLinkA New Link Function that Blends Two Specified Link Functions
blenderAnalyze biotic homogenization of landscapes
blightyUnited Kingdom coastlines
blkergmFitting block ERGM given the block structure on social networks
blmBinomial linear and linear-expit regression
blmeBayesian Linear Mixed-Effects Models
blmecoData Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"
blockclusterCoclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets
blockmatrixblockmatrix: Tools to solve algebraic systems with partitioned matrices
BlockMessageCreates strings that show a text message in 8 by 8 block letters
blockmodelingAn R package for Generalized and classical blockmodeling of valued networks
blockmodelsLatent and Stochastic Block Model Estimation by a 'V-EM' Algorithm
blockrandRandomization for block random clinical trials
blocksdesignNested Block Designs for Unstructured Treatments
blocksegTwo Dimensional Change-Points Detection
blockToolsBlock, Assign, and Diagnose Potential Interference in Randomized Experiments
BlossomStatistical Comparisons with Distance-Function Based Permutation Tests
BLRBayesian Linear Regression
blsAPIRequest Data from the U.S. Bureau of Labor Statistics API
blscrapeRAn API Wrapper for the Bureau of Labor Statistics (BLS)
BMABayesian Model Averaging
bmdBenchmark dose analysis for dose-response data
bmemMediation analysis with missing data using bootstrap
bmetaBayesian Meta-Analysis and Meta-Regression
BMhydPCM for Hybridization
BmixBayesian Sampling for Stick-Breaking Mixtures
bmkMCMC diagnostics package
bmlmBayesian Multilevel Mediation
bmmixBayesian multinomial mixture
BMNThe pseudo-likelihood method for pairwise binary markov networks
bmpRead Windows Bitmap (BMP) images
bmrmBundle Methods for Regularized Risk Minimization Package
BMRVBayesian Models for Rare Variant Association Analysis
BMSBayesian Model Averaging Library
BNDataGeneratorData Generator based on Bayesian Network Model
bnlearnBayesian Network Structure Learning, Parameter Learning and Inference
bnnSurvivalBagged k-Nearest Neighbors Survival Prediction
bnormnlrBayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models
BNPdensityFerguson-Klass Type Algorithm for Posterior Normalized Random Measures
bnpmrBayesian monotonic nonparametric regression
BNPTSclustA Bayesian Nonparametric Algorithm for Time Series Clustering
BNSPBayesian Non- and Semi-Parametric Model Fitting
bnspatialSpatial Implementation of Bayesian Networks and Mapping
bnstructBayesian Network Structure Learning from Data with Missing Values
boaBayesian Output Analysis Program (BOA) for MCMC
BoardGamesBoard Games and Tools for Building Board Games
bodenmillerProfilling of Peripheral Blood Mononuclear Cells using CyTOF
BOGBacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions
boilerpipeRInterface to the Boilerpipe Java Library
BOINBayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
boldInterface to Bold Systems 'API'
BolstadFunctions for Elementary Bayesian Inference
Bolstad2Bolstad functions
BonEVAn Improved Multiple Testing Procedure for Controlling False Discovery Rates
bookdownAuthoring Books with R Markdown
boolean3Boolean Binary Response Models
BoolNetConstruction, Simulation and Analysis of Boolean Networks
BoomBayesian Object Oriented Modeling
BoomSpikeSlabMCMC for Spike and Slab Regression
boostmtreeBoosted Multivariate Trees for Longitudinal Data
boostrA modular framework to bag or boost any estimation procedure
boostSeqOptimized GWAS cohort subset selection for resequencing studies
bootBootstrap Functions (Originally by Angelo Canty for S)
bootESBootstrap Effect Sizes
bootLRBootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests
bootnetBootstrap Methods for Various Network Estimation Routines
BootPRBootstrap Prediction Intervals and Bias-Corrected Forecasting
bootResBootstrapped Response and Correlation Functions
bootruinA bootstrap test for the probability of ruin in the classical risk process
bootspecdensTesting equality of spectral densities
bootsPLSBootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification
bootStepAICBootstrap stepAIC
bootstrapFunctions for the Book "An Introduction to the Bootstrap"
bootSVDFast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
bootTimeInferenceRobust Performance Hypothesis Testing with the Sharpe Ratio
boottolBootstrap Tolerance Levels for Credit Scoring Validation Statistics
BootWPTOSTest Stationarity using Bootstrap Wavelet Packet Tests
boralBayesian Ordination and Regression AnaLysis
BorutaWrapper Algorithm for All-Relevant Feature Selection
BoSSAa Bunch of Structure and Sequence Analysis
boussinesqAnalytic Solutions for (ground-water) Boussinesq Equation
boxplotdblDouble Box Plot for Two-Axes Correlation
boxrInterface for the ' API'
bpaBasic Pattern Analysis
bpcaBiplot of Multivariate Data Based on Principal Components Analysis
bpcpBeta Product Confidence Procedure for Right Censored Data
bPeaksbPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
BPECBayesian Phylogeographic and Ecological Clustering
bpkdeBack-Projected Kernel Density Estimation
bqtlBayesian QTL Mapping Toolkit
BradleyTerry2Bradley-Terry Models
braidReportsVisualize Combined Action Response Surfaces and Report BRAID Analyses
braidrmFitting Dose Response with the BRAID Combined Action Model
BrailleRImproved Access for Blind Users
brainGraphGraph Theory Analysis of Brain MRI Data
brainRHelper functions to misc3d and rgl packages for brain imaging
brainwaverBasic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory
BranchingSimulation and Estimation for Branching Processes
braQCABootstrapped Robustness Assessment for Qualitative Comparative Analysis
breakageSICM pipette tip geometry estimation
breakawaySpecies Richness Estimation and Modeling
breakpointAn R Package for Multiple Break-Point Detection via the Cross-Entropy Method
bReezeFunctions for wind resource assessment
brewTemplating Framework for Report Generation
brewdataExtracting Usable Data from the Grad Cafe Results Search
brglmBias reduction in binomial-response generalized linear models
brideBrier score decomposition of probabilistic forecasts for binary events
bridgedistAn Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
brmsBayesian Regression Models using Stan
brnnBayesian Regularization for Feed-Forward Neural Networks
BrobdingnagVery large numbers in R
bromanKarl Broman's R Code
broomConvert Statistical Analysis Objects into Tidy Data Frames
brotliA Compression Format Optimized for the Web
brrBayesian Inference on the Ratio of Two Poisson Rates
brranchingFetch 'Phylogenies' from Many Sources
BRugsInterface to the 'OpenBUGS' MCMC Software
BSagriStatistical methods for safety assessment in agricultural field trials
BSDABasic Statistics and Data Analysis
BSGSBayesian Sparse Group Selection
BSGWBayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression
bshazardNonparametric Smoothing of the Hazard Function
BsMDBayes Screening and Model Discrimination
bspecBayesian Spectral Inference
bspmmabspmma: Bayesian Semiparametric Models for Meta-Analysis
BSquareBayesian Simultaneous Quantile Regression
BSSasympAsymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates
bssnBirnbaum-Saunders Model Based on Skew-Normal Distribution
bstGradient Boosting
bstsBayesian Structural Time Series
btergmTemporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
btfEstimates univariate function via Bayesian trend filtering
BTLLassoModelling Heterogeneity in Paired Comparison Data
BTRTraining and Analysing Asynchronous Boolean Models
BTSPASBayesian Time-Strat. Population Analysis
BTYDImplementing Buy 'Til You Die Models
bujarBuckley-James Regression for Survival Data with High-Dimensional Covariates
bunchrAnalyze Bunching in a Kink or Notch Setting
burnrAdvanced Fire History Analysis in R
BurStFinBurns Statistics Financial
BurStMiscBurns Statistics miscellaneous
burstsMarkov model for bursty behavior in streams
bvarsvBayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
bvennA Simple alternative to proportional Venn diagrams
bvlsThe Stark-Parker algorithm for bounded-variable least squares
bvpSolveSolvers for Boundary Value Problems of Differential Equations
BVSBayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
bWGRBagging Whole-Genome Regression
BWStestBaumgartner Weiss Schindler Test of Equal Distributions
c060Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
c3netInfering large-scale gene networks with C3NET
C50C5.0 Decision Trees and Rule-Based Models
caSimple, Multiple and Joint Correspondence Analysis
cabootcrsBootstrap Confidence Regions for Correspondence Analysis
cacIRTClassification Accuracy and Consistency under Item Response Theory
CaDENCEConditional Density Estimation Network Construction and Evaluation
CADFtestThis package performs the CADF unit root test proposed in Hansen (1995)
cAIC4Conditional Akaike information criterion for lme4
CairoR graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
cairoDeviceEmbeddable Cairo Graphics Device Driver
calACSCalculations for All Common Subsequences
Calculator.LR.FNsCalculator for LR Fuzzy Numbers
CALFCoarse Approximation Linear Function
CALIBERrfimputeMultiple imputation using MICE and Random Forest
calibrarAutomated Parameter Estimation for Complex (Ecological) Models
calibrateCalibration of Scatterplot and Biplot Axes
CalibrateSSBWeighting and Estimation for Panel Data with Non-Response
calibratorBayesian calibration of complex computer codes
callrCall R from R
calmateImproved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
CAMCausal Additive Model (CAM)
CAMANFinite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
camelCalibrated Machine Learning
camtrapRCamera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
cancerGIAnalyses of Cancer Gene Interaction
cancerTimingEstimation of Temporal Ordering of Cancer Abnormalities
candiscVisualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
CanopyAccessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
CANSIM2RDirectly Extracts Complete CANSIM Data Tables
capeCombined Analysis of Pleiotropy and Epistasis
caperComparative Analyses of Phylogenetics and Evolution in R
capmCompanion Animal Population Management
captionerNumbers Figures and Creates Simple Captions
captrClient for the Captricity API
capusheCAlibrating Penalities Using Slope HEuristics
capwireEstimates population size from non-invasive sampling
carCompanion to Applied Regression
CARBayesSpatial Generalised Linear Mixed Models for Areal Unit Data
CARBayesdataData Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages
CARBayesSTSpatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
carcassEstimation of the Number of Fatalities from Carcass Searches
cardidatesIdentification of Cardinal Dates in Ecological Time Series
cardioModelCardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies
careHigh-Dimensional Regression and CAR Score Variable Selection
CARE1Statistical package for population size estimation in capture-recapture models
caretClassification and Regression Training
caretEnsembleEnsembles of Caret Models
caribouEstimation of caribou abundance based on large scale aggregations monitored by radio telemetry
CarletonStatsFunctions for Statistics Classes at Carleton College
CARLITEcological Quality Ratios Calculation and Plot
carolineA Collection of Database, Data Structure, Visualization, and Utility Functions for R
caRpoolsCRISPR AnalyzeR for Pooled CRISPR Screens
CARrampsOclReparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
cartographyThematic Cartography
carxCensored Autoregressive Model with Exogenous Covariates
caschronoSéries temporelles avec R - Méthodes et cas
caseMatchIdentify Similar Cases for Qualitative Case Studies
catAnalysis of categorical-variable datasets with missing values
catdapCategorical Data Analysis Program Package
catdataCategorical Data
CatDynFishery Stock Assessment by Generalized Depletion Models
cateHigh Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation
catenaryFits a Catenary to Given Points
CateSelectionCategorical Variable Selection Methods
catiCommunity Assembly by Traits: Individuals and Beyond
catIrtAn R Package for Simulating IRT-Based Computerized Adaptive Tests
catnetCategorical Bayesian Network Inference
caToolsTools: moving window statistics, GIF, Base64, ROC AUC, etc
catRProcedures to Generate Patterns under Computerized Adaptive Testing
catspecSpecial models for categorical variables
causaldrfTools for Estimating Causal Dose Response Functions
causaleffectDeriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models
CausalFXMethods for Estimating Causal Effects from Observational Data
CausalGAMEstimation of Causal Effects with Generalized Additive Models
causalsensSelection Bias Approach to Sensitivity Analysis for Causal Effects
CausataAnalysis utilities for binary classification and Causata users
CAvariantsCorrespondence Analysis Variants
cbaClustering for Business Analytics
CBPSCovariate Balancing Propensity Score
cbsodataRStatistics Netherlands (CBS) Open Data API Client
CCACanonical correlation analysis
CCAGFABayesian Canonical Correlation Analysis and Group Factor Analysis
ccaPP(Robust) Canonical Correlation Analysis via Projection Pursuit
cccdClass Cover Catch Digraphs
ccChooserDeveloping a core collections
cccpCone Constrained Convex Problems
cccrmConcordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
ccdaCombined Cluster and Discriminant Analysis
ccgarchConditional Correlation GARCH models
cchsCox Model for Case-Cohort Data with Stratified Subcohort-Selection
cclustConvex Clustering Methods and Clustering Indexes
CCMCorrelation classification method (CCM)
CCMnetSimulate Congruence Class Model for Networks
CCPSignificance Tests for Canonical Correlation Analysis (CCA)
CCpopOne and two locus GWAS of binary phenotype with case-control-population design
CCTpackCultural Consensus Theory applications to data
cdaCoupled dipole approximation of light scattering by clusters of nanoparticles
cdbReading and Writing Constant DataBases
cdcfluviewRetrieve U.S. Flu Season Data from the CDC FluView Portal
cdcsisConditional Distance Correlation and Its Related Feature Screening Method
cdfquantregQuantile Regression for Random Variables on the Unit Interval
CDFtStatistical downscaling through CDF-transform
CDLassoCoordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
CDMCognitive Diagnosis Modeling
CDNmoneyComponents of Canadian Monetary and Credit Aggregates
cdomR Functions to Model CDOM Spectra
CDROMPhylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data
cdsConstrained Dual Scaling for Detecting Response Styles
CDVineStatistical Inference of C- And D-Vine Copulas
CECCross-Entropy Clustering
cec2005benchmarkBenchmark for the CEC 2005 Special Session on Real-Parameter Optimization
cec2013Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
CEGOCombinatorial Efficient Global Optimization
celestialCollection of Common Astronomical Conversion Routines and Functions
cellrangerTranslate Spreadsheet Cell Ranges to Rows and Columns
CellularAutomatonOne-Dimensional Cellular Automata
cellVolumeDistFunctions to fit cell volume distributions and thereby estimate cell growth rates and division times
cemCoarsened Exact Matching
cemsConditional Expectation Manifolds
CensMixRegCensored Linear Mixture Regression Models
censNIDcensored NID samples
censorcopulaEstimate Parameter of Bivariate Copula
censRegCensored Regression (Tobit) Models
CensRegModFits Normal and Student-t Censored Regression Model
censusrCollect Data from the Census API
centsCensored time series
CEoptimCross-Entropy R Package for Optimization
CePaCentrality-based pathway enrichment
CepLDADiscriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability
ceppContext Driven Exploratory Projection Pursuit
CerioliOutlierDetectionOutlier Detection Using the Iterated RMCD Method of Cerioli (2010)
cernnCovariance Estimation Regularized by Nuclear Norm Penalties
CFCCause-Specific Framework for Competing-Risk Analysis
CfEstimateQuantilesEstimate quantiles using any order Cornish-Fisher expansion
cffdrsCanadian Forest Fire Danger Rating System
cgCompare Groups, Analytically and Graphically
cgamConstrained Generalized Additive Model
cgAUCCalculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it
cgdsrR-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
cggdContinuous Generalized Gradient Descent
cghMicroarray CGH analysis using the Smith-Waterman algorithm
cghFLassoDetecting hot spot on CGH array data with fused lasso regression
cghsegSegmentation Methods for Array CGH Analysis
CGPComposite Gaussian process models
cgwtoolsMiscellaneous Tools
ChainLadderStatistical Methods and Models for Claims Reserving in General Insurance
changepointMethods for Changepoint Detection
changepoint.npMethods for Nonparametric Changepoint Detection
ChangepointTestingChange Point Estimation for Clustered Signals
ChannelAttributionMarkov Model for the Online Multi-Channel Attribution Problem
ChannelAttributionAppShiny Web Application for the Multichannel Attribution Problem
Chaos010-1 Test for Chaos
ChaosGameChaos Game
ChargeTransportCharge Transfer Rates and Charge Carrier Mobilities
CHATClonal Heterogeneity Analysis Tool
CHCNCanadian Historical Climate Network
chebDiscrete Linear Chebyshev Approximation
chebpolMultivariate Chebyshev Interpolation
CheckDigitCalculate and verify check digits
checkmateFast and Versatile Argument Checks
checkpointInstall Packages from Snapshots on the Checkpoint Server for Reproducibility
cheddarAnalysis and Visualisation of Ecological Communities
chemCalCalibration Functions for Analytical Chemistry
chemometricsMultivariate Statistical Analysis in Chemometrics
ChemometricsWithRChemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
ChemometricsWithRDataData for package ChemometricsWithR
ChemoSpecExploratory Chemometrics for Spectroscopy
cherryMultiple Testing Methods for Exploratory Research
CHFFClosest History Flow Field Forecasting for Bivariate Time Series
chiThe Chi Distribution
childsdsCalculation of standard deviation scores adduced from different growth standards
chillRStatistical Methods for Phenology Analysis in Temperate Fruit Trees
chipPCRToolkit of Helper Functions to Pre-Process Amplification Data
ChIPtestNonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data
chngptChange Point Regression
CHNOSZChemical Thermodynamics and Activity Diagrams
choiceDesDesign Functions for Choice Studies
ChoiceModelRChoice Modeling in R
choplumpChoplump tests
chopthinThe Chopthin Resampler
chordsEstimation in respondent driven samples
choroplethrSimplify the Creation of Choropleth Maps in R
choroplethrAdmin1Contains an Administrative-Level-1 Map of the World
choroplethrMapsContains maps used by the choroplethr package
chromerInterface to Chromosome Counts Database API
chromoRAnalysis of chromosomal interactions data (correction, segmentation and comparison)
chronChronological Objects which can Handle Dates and Times
CHsharpChoi and Hall Style Data Sharpening
chunkedChunkwise Text-File Processing for 'dplyr'
CIDnetworksGenerative Models for Complex Networks with Conditionally Independent Dyadic Structure
CIFsmryWeighted summary of cumulative incidence functions
cinCausal Inference for Neuroscience
CINIDCurculionidae INstar IDentification
CINOEDVCo-Information based N-Order Epistasis Detector and Visualizer
CircECircumplex models Estimation
circlizeCircular Visualization
CircNNTSRStatistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models
CircOutlierDetection of Outliers in Circular-Circular Regression
CircStatsCircular Statistics, from "Topics in circular Statistics" (2001)
circularCircular Statistics
cIRTChoice Item Response Theory
citCausal Inference Test
CITANCITation ANalysis Toolpack
citbcmstCIT Breast Cancer Molecular SubTypes Prediction
citccmstCIT Colon Cancer Molecular SubTypes Prediction
CiteAn RStudio Addin to Insert BibTex Citation in Rmarkdown Documents
CityPlotVisualization of structure and contents of a database
cjointAMCE Estimator for Conjoint Experiments
ckanrClient for the Comprehensive Knowledge Archive Network ('CKAN') 'API'
Ckmeans.1d.dpOptimal and Fast Univariate k-Means Clustering
cladoRcppC++ implementations of phylogenetic cladogenesis calculations
ClamRTime Series Modeling for Climate Change Proxies
clarifaiAccess to Clarifai API
classFunctions for Classification
classGraphConstruct Graphs of S4 Class Hierarchies
classiflyExplore classification models in high dimensions
classifyClassification Accuracy and Consistency under IRT models
classIntChoose Univariate Class Intervals
classyfireRobust multivariate classification using highly optimised SVM ensembles
cleangeoCleaning Geometries from Spatial Objects
clereSimultaneous Variables Clustering and Regression
clhsConditioned Latin Hypercube Sampling
ClickClustModel-Based Clustering of Categorical Sequences
clickstreamAnalyzes Clickstreams Based on Markov Chains
clifroEasily Download and Visualise Climate Data from CliFlo
clikcorrCensoring Data and Likelihood-Based Correlation Estimation
ClimClassClimate Classification According to Several Indices
climdex.pcicPCIC Implementation of Climdex Routines
climeConstrained L1-minimization for Inverse (covariance) Matrix Estimation
climtrendsStatistical Methods for Climate Sciences
climwinClimate Window Analysis
clinfunClinical Trial Design and Data Analysis Functions
clinsigClinical Significance Functions
clinUtiDNAClinical Utility of DNA Testing
cliprRead and Write from the System Clipboard
clisymbolsUnicode Symbols at the R Prompt
CLMEConstrained Inference for Linear Mixed Effects Models
clogitboostBoosting Conditional Logit Model
clogitL1Fitting exact conditional logistic regression with lasso and elastic net penalties
cloudUtilCloud Utilization Plots
clpAPIR Interface to C API of COIN-OR Clp
CLSOCPA smoothing Newton method SOCP solver
clttoolsCentral Limit Theorem Experiments (Theoretical and Simulation)
clubSandwichCluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
clueCluster Ensembles
ClueRCLUster Evaluation (CLUE)
cluesClustering Method Based on Local Shrinking
CluMixClustering and Visualization of Mixed-Type Data
clusrankWilcoxon Rank Sum Test for Clustered Data
cluster"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
clusterCritClustering Indices
cluster.datasetsCluster Analysis Data Sets
ClusteredMutationsLocation and Visualization of Clustered Somatic Mutations
clusterflyExplore clustering interactively using R and GGobi
clusterGenerationRandom Cluster Generation (with Specified Degree of Separation)
clusterGenomicsIdentifying clusters in genomics data by recursive partitioning
clusterhapClustering Genotypes in Haplotypes Distance-Based Clustering for Multidimensional Data with Sequential Constraint
clusterPowerPower calculations for cluster-randomized and cluster-randomized crossover trials
ClusterRankTestRank Tests for Clustered Data
clusterReproReproducibility of gene expression clusters
clusterSEsCalculate Cluster-Robust p-Values and Confidence Intervals
clusterSimSearching for Optimal Clustering Procedure for a Data Set
ClusterStabilityAssessment of Stability of Individual Objects or Clusters in Partitioning Solutions
clustertendCheck the Clustering Tendency
clustevalEvaluation of Clustering Algorithms
ClustGeoClustering of Observations with Geographical Constraints
clustMDModel Based Clustering for Mixed Data
clustMixTypek-Prototypes Clustering for Mixed Variable-Type Data
ClustMMDDVariable Selection in Clustering by Mixture Models for Discrete Data
ClustOfVarClustering of variables
clustrdMethods for joint dimension reduction and clustering
clustsigSignificant Cluster Analysis
ClustVarLVClustering of Variables Around Latent Variables
clustvarselVariable Selection for Model-Based Clustering
clvCluster Validation Techniques
clValidValidation of Clustering Results
cmaesCovariance Matrix Adapting Evolutionary Strategy
cmaesrCovariance Matrix Adaptation Evolution Strategy
CMCCronbach-Mesbah Curve
CMFCollective matrix factorization
cmmCategorical Marginal Models
cmnaComputational Methods for Numerical Analysis
CMPControlControl Charts for Conway-Maxwell-Poisson Distribution
CMplotCircle Manhattan Plot
cmprskSubdistribution Analysis of Competing Risks
cmprskQRAnalysis of Competing Risks Using Quantile Regressions
cmrutilsMisc Functions of the Center for the Mathematical Research
cmsafTools for CM SAF Netcdf Data
cmvnormThe Complex Multivariate Gaussian Distribution
cnaA Package for Coincidence Analysis (CNA)
cncaGUICanonical Non-Symmetrical Correspondence Analysis in R
cnmlcdMaximum Likelihood Estimation of a Log-Concave Density Function
CNOGproCopy Numbers of Genes in prokaryotes
CNprepPre-process DNA Copy Number (CN) Data for Detection of CN Events
CNVassocAssociation Analysis of CNV Data and Imputed SNPs
CNVassocDataExample data sets for association analysis of CNV data
coalaA Framework for Coalescent Simulation
coalescentMCMCMCMC Algorithms for the Coalescent
coarseDataToolsA Collection of Functions to Help with Analysis of Coarsely Observed Data
cobaltCovariate Balance Tables and Plots
COBRANonlinear Aggregation of Predictors
cobsCOnstrained B-Splines (Sparse Matrix Based)
CoClustCopula Based Cluster Analysis
COCONUTCOmbat CO-Normalization Using conTrols (COCONUT)
cocorComparing Correlations
cocoregExtracts Shared Variation in Collections of Datasets Using Regression Models
cocorrespCo-Correspondence Analysis Methods
cocronStatistical Comparisons of Two or more Alpha Coefficients
codaOutput Analysis and Diagnostics for MCMC
codadiagsMarkov chain Monte Carlo burn-in based on "bridge" statistics
cOdeAutomated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages
codepMultiscale Codependence Analysis
codetoolsCode Analysis Tools for R
codingMatricesAlternative Factor Coding Matrices for Linear Model Formulae
codynCommunity Dynamics Metrics
coefficientalphaRobust Coefficient Alpha and Omega with Missing and Non-Normal Data
coefplotPlots Coefficients from Fitted Models
coenoclinerCoenocline Simulation
coenoflexGradient-Based Coenospace Vegetation Simulator
coexistSpecies coexistence modeling and analysis
cofeatureRGenerate Cofeature Matrices
CoImpCopula based imputation method
coinConditional Inference Procedures in a Permutation Test Framework
CoinMinDSimultaneous Confidence Interval for Multinomial Proportion
cointmonitoRConsistent Monitoring of Stationarity and Cointegrating Relationships
cointRegParameter Estimation and Inference in a Cointegrating Regression
coldCount Longitudinal Data
CollapsABELGeneralized CDH (GCDH) Analysis
CollocInferCollocation Inference for Dynamic Systems
collUtilsAuxiliary Package for Package 'CollapsABEL'
colocColocalisation tests of two genetic traits
coloredICAImplementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis
colorfulVennPlotPlot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
colorhcplotColorful Hierarchical Clustering Dendrograms
ColorPaletteColor Palettes Generator
colorRampsBuilds color tables
colorscienceColor Science Methods and Data
colorspaceColor Space Manipulation
colorSpecColor Calculations with Emphasis on Spectral Data
colortoolsTools for colors in a Hue-Saturation-Value (HSV) color model
colourloversR Client for the COLOURlovers API
comatoAnalysis of Concept Maps
COMBIASynergy/Antagonism Analyses of Drug Combinations
combinatcombinatorics utilities
CombineGame-Theoretic Probability Combination
CombinePortfolioEstimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies
CombinePValueCombine a Vector of Correlated p-values
CombinSConstruction Methods of some Series of PBIB Designs
CombMSCCombined Model Selection Criteria
comclimCommunity climate statistics
cometExactTestExact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm
comfFunctions for Thermal Comfort Research
ComICSComputational Methods for Immune Cell-Type Subsets
commandrCommand pattern in R
commentrPrint Nicely Formatted Comments for Use in Script Files
CommonJavaJarsUseful libraries for building a Java based GUI under R
commonmarkBindings to the CommonMark Reference Implementation
CommonTrendExtract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics
CommTComparative Phylogeographic Analysis using the Community Tree Framework
COMMUNALRobust Selection of Cluster Number K
CommunityCorrelogramEcological Community Correlogram
Comp2ROCCompare Two ROC Curves that Intersect
compactrCreates empty plots with compact axis notation
compareComparing Objects for Differences
compareCCompare Two Correlated C Indices with Right-censored Survival Outcome
CompareCausalNetworksInterface to Diverse Estimation Methods of Causal Networks
compareDFDo a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
compareGroupsDescriptive Analysis by Groups
compareODMcomparison of medical forms in CDISC ODM format
CompareTestsCorrect for Verification Bias in Diagnostic Accuracy & Agreement
comparisonMultivariate likelihood ratio calculation and evaluation
compeirEvent-specific incidence rates for competing risks data
compendiumdbTools for Retrieval and Storage of Functional Genomics Data
competeAnalyzing Social Hierarchies
CompGLMConway-Maxwell-Poisson GLM and distribution functions
compHclustComplementary Hierarchical Clustering
CompindComposite Indicators Functions
ComplexAnalysisNumerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions
complmrobRobust Linear Regression with Compositional Data as Covariates
CompLognormalFunctions for actuarial scientists
compoissonConway-Maxwell-Poisson Distribution
COMPoissonRegConway-Maxwell Poisson (COM-Poisson) Regression
CompositionalCompositional Data Analysis
compositionsCompositional Data Analysis
compound.CoxRegression Estimation Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
CompoundingComputing Continuous Distributions
CompQuadFormDistribution function of quadratic forms in normal variables
CompRPaired Comparison Data Analysis
CompRandFldComposite-Likelihood Based Analysis of Random Fields
compute.esCompute Effect Sizes
ConakeContinuous Associated Kernel Estimation
concatenateHuman-Friendly Text from Unknown Strings
conclustPairwise Constraints Clustering
ConConPiWiFunOptimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
concordanceProduct Concordance
concregConcordance regression
condApproximate conditional inference for logistic and loglinear models
condformatConditional Formatting in Data Frames
condGEEParameter estimation in conditional GEE for recurrent event gap times
condmixtConditional Density Estimation with Neural Network Conditional Mixtures
condMVNormConditional Multivariate Normal Distribution
CONDOPCondition-Dependent Operon Predictions
CondRegCondition Number Regularized Covariance Estimation
condSURVEstimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
condvisConditional Visualization for Statistical Models
coneprojPrimal or Dual Cone Projections with Routines for Constrained Regression
conf.designConstruction of factorial designs
confidenceConfidence Estimation of Environmental State Classifications
configManage Environment Specific Configuration Values
conformalConformal Prediction for Regression and Classification
confreqConfigural Frequencies Analysis Using Log-Linear Modeling
conicfitAlgorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
conicsPlot Conics
ConigraveFlexible Tools for Multiple Imputation
conjointConjoint analysis package
ConjointChecksA package to check the cancellation axioms of conjoint measurement
connect3A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files
ConnMatToolsTools for working with connectivity matrices
conover.testConover-Iman Test of Multiple Comparisons Using Rank Sums
ConSplinePartial Linear Least-Squares Regression using Constrained Splines
ConsRankCompute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
constrainedKrigingConstrained, Covariance-Matching Constrained and Universal Point or Block Kriging
ContaminatedMixtModel-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution
contfracContinued Fractions
contingBayesian Analysis of Contingency Tables
contoureRContouring of Non-Regular Three-Dimensional Data
contrastA collection of contrast methods
controlTestMedian Comparison for Two-Sample Right-Censored Survival Data
ConvCalendarConverts dates between calendars
ConvergenceConceptsSeeing convergence concepts in action
convertGraphConvert Graphical Files Format
convevolQuantifies and assesses the significance of convergent evolution
conveyIncome Concentration Analysis with Complex Survey Samples
convoSPATConvolution-Based Nonstationary Spatial Modeling
cooccurProbabilistic Species Co-Occurrence Analysis in R
coopCo-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations
cooptreesCooperative aspects of optimal trees in weighted graphs
copBasicGeneral Bivariate Copula Theory and Many Utility Functions
copCARFitting the copCAR Regression Model for Discrete Areal Data
copeCoverage Probability Excursion (CoPE) Sets
copulaMultivariate Dependence with Copulas
CopulaDTACopula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies
copulaedasEstimation of Distribution Algorithms Based on Copulas
Copula.MarkovEstimation and Statistical Process Control Under Copula-Based Time Series Models
CopulaRegressionBivariate Copula Based Regression Models
CopulaREMADACopula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies
CopyDetectComputing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
CopyNumber450kCancerBaseline Correction for Copy Number Data from Cancer Samples
CorbiCollection of Rudimentary Bioinformatics Tools
corclassCorrelational Class Analysis
corcountsGenerate correlated count random variables
cordCommunity Estimation in G-Models via CORD
CORECores of Recurrent Events
CORElearnClassification, Regression and Feature Evaluation
coreNLPWrappers Around Stanford CoreNLP Tools
coreSimCore Functionality for Simulating Quantities of Interest from Generalised Linear Models
coreTDTTDT for compound heterozygous and recessive models
corHMMAnalysis of Binary Character Evolution
corkscrewPreprocessor for Data Modeling
CORMThe Clustering of Regression Models Method
corpcorEfficient Estimation of Covariance and (Partial) Correlation
corporaStatistics and data sets for corpus frequency data
corr2DImplementation of 2D Correlation Analysis
CorrBinNonparametrics with Clustered Binary and Multinomial Data
correctedAUCCorrecting AUC for Measurement Error
CorrectOverloadedPeaksCorrect Overloaded Peaks from GC-APCI-MS Data
CorRegLinear Regression Based on Linear Structure Between Covariates
corregpFunctions and Methods for Correspondence Regression
CorrelplotA collection of functions for graphing correlation matrices
corrgramPlot a Correlogram
CorrMixedEstimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
corrplotVisualization of a Correlation Matrix
corrrCorrelations in R
CorrToolBoxModeling Correlational Magnitude Transformations in Discretization Contexts
corToolsTools for processing data after a Genome Wide Association Study
COSINECOndition SpecIfic sub-NEtwork
cosinorTools for estimating and predicting the cosinor model
cosmoFnsFunctions for cosmological distances, times, luminosities, etc
CosmoPhotozPhotometric redshift estimation using generalized linear models
cossoFit Regularized Nonparametric Regression Models Using COSSO Penalty
costatTime series costationarity determination
CosWThe CosW Distribution
cotrendConsistant Cotrend Rank Selection
couchDBConnect to and Work with CouchDB Databases
COUNTFunctions, data and code for count data
CountrFlexible Univariate and Bivariate Count Process Probability
countrycodeConvert Country Names and Country Codes
CountsEPPMMean and Variance Modeling of Count Data
countytimezonesConvert from UTC to Local Time for United States Counties
COUSCOusA Residue-Residue Contact Detecting Method
covafillrLocal Polynomial Regression of State Dependent Covariates in State-Space Models
covBMBrownian Motion Processes for 'nlme'-Models
covLCALatent Class Models with Covariate Effects on Underlying and Measured Variables
covmatCovariance Matrix Estimation
covrTest Coverage for Packages
covregA simultaneous regression model for the mean and covariance
covRobustRobust Covariance Estimation via Nearest Neighbor Cleaning
CovSelModel-Free Covariate Selection
CovSelHighModel-Free Covariate Selection in High Dimensions
covsepTests for Determining if the Covariance Structure of 2-Dimensional Data is Separable
covTestComputes covariance test for adaptive linear modelling
cowplotStreamlined Plot Theme and Plot Annotations for 'ggplot2'
cowsayMessages, Warnings, Strings with Ascii Animals
CoxBoostCox models by likelihood based boosting for a single survival endpoint or competing risks
coxintervalCox-Type Models for Interval-Censored Data
coxmeMixed Effects Cox Models
CoxnetRegularized Cox Model
coxphfCox regression with Firth's penalized likelihood
coxphwWeighted Estimation in Cox Regression
CoxPlusCox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects
CoxRidgeCox Models with Dynamic Ridge Penalties
coxrobustRobust Estimation in Cox Model
coxseiFitting a CoxSEI Model
CPConditional Power Calculations
cp4pCalibration Plot for Proteomics
cpaConfirmatory Path Analysis through the d-sep tests
cpcaMethods to perform Common Principal Component Analysis (CPCA)
CPEConcordance Probability Estimates in Survival Analysis
CpGassocAssociation Between Methylation and a Phenotype of Interest
cpgenParallelized Genomic Prediction and GWAS
CpGFilterCpG Filtering Method Based on Intra-class Correlation Coefficients
CPHshapeFind the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
cpkClinical Pharmacokinetics
cplexAPIR Interface to C API of IBM ILOG CPLEX
cplmCompound Poisson Linear Models
cpmSequential and Batch Change Detection Using Parametric and Nonparametric Methods
CPMCGLMCorrection of the pvalue after multiple coding
CprobConditional probability function of a competing event
cqrRegQuantile, Composite Quantile Regression and Regularized Versions
cquadConditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data
CRPower Calculation for Weighted Log-Rank Tests in Cure Rate Models
CRACCosmology R Analysis Code
crackRProbabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
cramerMultivariate nonparametric Cramer-Test for the two-sample-problem
crandatapkgsFind Data-Only Packages on CRAN
crankCompleting Ranks
cranlogsDownload Logs from the 'RStudio' 'CRAN' Mirror
crantasticVarious R tools for
crawlFit Continuous-Time Correlated Random Walk Models to Animal Movement Data
crayonColored Terminal Output
crblocksCategorical Randomized Block Data Analysis
crchCensored Regression with Conditional Heteroscedasticity
CreditMetricsFunctions for calculating the CreditMetrics risk model
creditrCredit Default Swaps in R
creduleCredit Default Swap Functions
CRFConditional Random Fields
cricketrAnalyze Cricketers Based on ESPN Cricinfo Statsguru
crimCVGroup-Based Modelling of Longitudinal Data
crimelinkageStatistical Methods for Crime Series Linkage
CRMContinual Reassessment Method (CRM) for Phase I Clinical Trials
crmnCCMN and other noRMalizatioN methods for metabolomics data
crmPackObject-Oriented Implementation of CRM Designs
crnDownloads and Builds datasets for Climate Reference Network
cropGraphics Cropping Tool
CrossClusteringA Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers
crossdesConstruction of Crossover Designs
crossmatchThe Cross-match Test
CrossoverAnalysis and Search of Crossover Designs
crossRegConfidence intervals for crossover points of two simple regression lines
crossvalGeneric Functions for Cross Validation
crp.CSFPCreditRisk+ Portfolio Model
crqaCross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
crrpPenalized Variable Selection in Competing Risks Regression
crrSCCompeting risks regression for Stratified and Clustered data
crrstepStepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model
crsCategorical Regression Splines
crskdiagDiagnostics for Fine and Gray Model
crsnlsNonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe'
crtestsClassification and Regression Tests
CRTgeeDRDoubly Robust Inverse Probability Weighted Augmented GEE Estimator
CRTSizeSample Size Estimation Functions for Cluster Randomized Trials Data Tools
crutsInterface to Climatic Research Unit Time-Series Version 3.21 Data
CrypticIBDcheckIdentifying cryptic relatedness in genetic association studies
CryptRndTestStatistical Tests for Cryptographic Randomness
csamplingFunctions for Conditional Simulation in Regression-Scale Models
cSFMCovariate-adjusted Skewed Functional Model (cSFM)
cshapesCShapes Dataset and Utilities
cslogisticConditionally Specified Logistic Regression
csnClosed Skew-Normal Distribution
cspCorrelates of State Policy Data Set in R
csrplusMethods to Test Hypotheses on the Distribution of Spatial Point Processes
csSAMcsSAM - cell-specific Significance Analysis of Microarrays
cssToolsCognitive Social Structure Tools
cstarSubstantive significance testing for regression estimates and marginal effects
csvreadFast Specialized CSV File Loader
ctmcmoveModeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmmContinuous-Time Movement Modeling
ctsContinuous Time Autoregressive Models
ctsemContinuous Time Structural Equation Modelling
CTTClassical Test Theory Functions
CTTShinyClassical Test Theory via Shiny
ctvCRAN Task Views
CUBA Class of Mixture Models for Ordinal Data
cubatureAdaptive multivariate integration over hypercubes
cubfitsCodon Usage Bias Fits
CubistRule- and Instance-Based Regression Modeling
cudaBayesregCUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
cudaBayesregDataData sets for the examples used in the package "cudaBayesreg"
cudiaCUDIA Cross-level Imputation
CUFFCharles's Utility Function using Formula
CUMPAnalyze Multivariate Phenotypes by Combining Univariate results
cumplyrExtends ddply to allow calculation of cumulative quantities
cumSegChange point detection in genomic sequences
curlA Modern and Flexible Web Client for R
curlconverterTools to Transform 'cURL' Command-Line Calls to 'httr' Requests
currentSurvivalEstimation of CCI and CLFS Functions
curvetestThe package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities
curvHDRFiltering of Flow Cytometry Samples
cuspCusp-Catastrophe Model Fitting Using Maximum Likelihood
customizedTrainingCustomized Training for Lasso and Elastic-Net Regularized Generalized Linear Models
CUSUMdesignCompute Decision Interval and Average Run Length for CUSUM Charts
cutoffRCUTOFF: A Spatio-temporal Imputation Method
cuttlefish.modelAn R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
cvAUCCross-Validated Area Under the ROC Curve Confidence Intervals
CVcalibrationEstimation of the Calibration Equation with Error-in Observations
cvplogisticPenalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
cvq2Calculate the predictive squared correlation coefficient
CVSTFast Cross-Validation via Sequential Testing
CVThreshLevel-Dependent Cross-Validation Thresholding
cvToolsCross-validation tools for regression models
CVTuningCovRegularized Estimators of Covariance Matrices with CV Tuning
cvxbiclustrConvex Biclustering Algorithm
cvxclustrSplitting methods for convex clustering
cwhmiscMiscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools
cwmCluster Weighted Models by EM algorithm
cxxfunplusextend cxxfunction by saving the dynamic shared objects
cycleRtoolsTools for Cycling Data Analysis
cyclocompCyclomatic Complexity of R Code
cymruservicesQuery 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services
cyphidCycle and Phase Identification for mastication data
cystiSimAgent-Based Model for Taenia_solium Transmission and Control
cytoDivCytometric diversity indices
D2CPredicting Causal Direction from Dependency Features
d3heatmapInteractive Heat Maps Using 'htmlwidgets' and 'D3.js'
D3MTwo Sample Test with Wasserstein Metric
d3NetworkTools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
DAAGData Analysis and Graphics Data and Functions
DAAGbioData Sets and Functions, for demonstrations with expression arrays and gene sequences
DAAGxtrasData Sets and Functions, supplementary to DAAG
dadThree-Way Data Analysis Through Densities
daeFunctions Useful in the Design and ANOVA of Experiments
daewrDesign and Analysis of Experiments with R
daffDiff, Patch and Merge for Data.frames
dafsData analysis for forensic scientists
dagbagLearning directed acyclic graphs (DAGs) through bootstrap aggregating
DAGGERConsensus genetic maps
dagittyGraphical Analysis of Structural Causal Models
dagRR functions for directed acyclic graphs
DaimDiagnostic accuracy of classification models
DAISIEDynamical Assembly of Islands by Speciation, Immigration and Extinction
DAKSData Analysis and Knowledge Spaces
DALYDALY Calculator - A GUI for stochastic DALY calculation in R
damData Analysis Metabolomics
DAMiscDave Armstrong's Miscellaneous Functions
DAMOCLESDynamic Assembly Model of Colonization, Local Extinction and Speciation
damsDams in the United States from the National Inventory of Dams (NID)
DandEFADandelion Plot for R-Mode Exploratory Factor Analysis
darchPackage for Deep Architectures and Restricted Boltzmann Machines
DarkThe Analysis of Dark Adaptation Data
dartsStatistical Tools to Analyze Your Darts Game
dashboardInteractive Data Visualization with D3.js
DatABELFile-Based Access to Large Matrices Stored on HDD in Binary Format
datacheckTools for Checking Data Consistency
datacheckrData Checking
DataCleanData Cleaning
DataCombineTools for Easily Combining and Cleaning Data Sets
datadrDivide and Recombine for Large, Complex Data
DataExplorerData Explorer
dataframes2xlsdataframes2xls writes data frames to xls files
datafsmEstimating Finite State Machine Models from Data
DataLoaderImport Multiple File Types
datamapA system for mapping foreign objects to R variables and environments
datamartUnified access to your data sources
dataonderivativesEasily Source Publicly Available Data on Derivatives
dataoneR Interface to the DataONE REST API
datapackA Flexible Container to Transport and Manipulate Data and Associated Resources
dataQualityRPerforms variable level data quality checks and generates summary statistics
dataRetrievalRetrieval Functions for USGS and EPA Hydrologic and Water Quality Data
datarobotDataRobot Predictive Modeling API
datasteprAn Implementation of a SAS-Style Data Step
data.tableExtension of Data.frame
data.treeGeneral Purpose Hierarchical Data Structure
datautilsSupport functions for packages VBmix, semisupKernelPCA, and patchPlot
dataviewData and Workspace Browser for Terminals
dateFunctions for handling dates
DATforDCEMRIDeconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
daveFunctions for "Data Analysis in Vegetation Ecology"
DaviesThe Davies Quantile Function
dawaiDiscriminant Analysis with Additional Information
dbartsDiscrete Bayesian Additive Regression Trees Sampler
dbConnectProvides a graphical user interface to connect with databases that use MySQL
dbEmpLikeGOFGoodness-of-fit and two sample comparison tests using sample entropy
dbEmpLikeNormTest for joint assessment of normality
DBESTDetecting Breakpoints and Estimating Segments in Trend
DBGSAmethods of distance-based gene set functional enrichment analysis
DBIR Database Interface
DBItestTesting 'DBI' Back Ends
DBKGradDiscrete Beta Kernel Graduation of Mortality Data
dblcensCompute the NPMLE of distribution from doubly censored data
dbmssDistance-Based Measures of Spatial Structures
dbscanDensity Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
dbstatsDistance-Based Statistics
DCchoiceAnalyzing Dichotomous Choice Contingent Valuation Data
dcemriS4A Package for Image Analysis of DCE-MRI (S4 Implementation)
DCGData Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
DCGLDifferential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
dcGORAnalysis of Ontologies and Protein Domain Annotations
dChipIOMethods for Reading dChip Files
DCLClaims Reserving under the Double Chain Ladder Model
dcloneData Cloning and MCMC Tools for Maximum Likelihood Methods
DClusterFunctions for the Detection of Spatial Clusters of Diseases
dcmleHierarchical Models Made Easy with Data Cloning
dcmrAttribute profile estimation using Diagnostic Classification Models and MCMC
DCODEList Linear n-Peptide Constraints for Overlapping Protein Regions
dCovTSDistance Covariance and Correlation for Time Series Analysis
dcvConventional Cross-validation statistics for climate-growth model
ddalphaDepth-Based Classification and Calculation of Data Depth
DDDDiversity-Dependent Diversification
ddeployWrapper for the Duke Deploy REST API
DDHFmVariance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
ddpcrAnalysis and Visualization of Droplet Digital PCR in R and on the Web
ddRDistributed Data Structures in R
DDRTreeLearning Principal Graphs with DDRTree
ddstData Driven Smooth Tests
dealLearning Bayesian Networks with Mixed Variables
deamerDeconvolution density estimation with adaptive methods for a variable prone to measurement error
debugMVB's debugger for R
DECIDEDEComposition of Indirect and Direct Effects
decisionStatistical Decision Analysis
DecisionCurveCalculate and Plot Decision Curves
decisionSupportQuantitative Support of Decision Making under Uncertainty
decodeDifferential Co-Expression and Differential Expression Analysis
decoderDecode Coded Variables to Plain Text (and Vice Versa)
decomprGlobal-Value-Chain Decomposition
deconDeconvolution Estimation in Measurement Error Models
deconstructSigsIdentifies Signatures Present in a Tumor Sample
DeducerA Data Analysis GUI for R
DeducerExtrasAdditional dialogs and functions for Deducer
DeducerPlugInExampleDeducer Plug-in Example
DeducerPlugInScalingReliability and factor analysis plugin
DeducerSpatialDeducer for spatial data analysis
DeducerSurvivalAdd Survival Dialogue to Deducer
DeducerTextDeducer GUI for Text Data
deducorrectDeductive Correction, Deductive Imputation, and Deterministic Correction
deductiveData Correction and Imputation Using Deductive Methods
deepboostDeep Boosting Ensemble Modeling
deeplearningAn Implementation of Deep Neural Network for Regression and Classification
deepnetdeep learning toolkit in R
DEEPRDirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test
deformulaIntegration of One-Dimensional Functions with Double Exponential Formulas
degenesDetection of differentially expressed genes
degreenetModels for Skewed Count Distributions Relevant to Networks
DelaporteStatistical Functions for the Delaporte Distribution
deldirDelaunay Triangulation and Dirichlet (Voronoi) Tessellation
DeLoreanEstimates Pseudotimes for Single Cell Expression Data
deltEstimation of Multivariate Densities Using Adaptive Partitions
deltaPlotRIdentification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
DemerelateFunctions to Calculate Relatedness on Diploid Genetic Data
DEMEticsEvaluating the genetic differentiation between populations based on Gst and D values
demiDifferential Expression from Multiple Indicators
demingDeming, Thiel-Sen and Passing-Bablock Regression
demographyForecasting mortality, fertility, migration and population data
demoKdeKernel Density Estimation for Demonstration Purposes
DEMOVADEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set
dendextendExtending R's Dendrogram Functionality
dendextendRcppFaster Dendrogram Manipulation using 'Rcpp'
dendroextrasExtra functions to cut, label and colour dendrogram clusters
dendrometeRAnalyzing Dendrometer Data
DendSerDendrogram seriation: ordering for visualisation
dendsortModular Leaf Ordering Methods for Dendrogram Nodes
DengueRTParameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
denoiseRRegularized Low Rank Matrix Estimation
denovolyzeRStatistical Analyses of De Novo Genetic Variants
denproVisualization of Multivariate Functions, Sets, and Data
densityClustClustering by Fast Search and Find of Density Peaks
Density.T.HoldOutDensity.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
DensParcorrDens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks
densratioDensity Ratio Estimation
denstripDensity strips and other methods for compactly illustrating distributions
DEoptimGlobal Optimization by Differential Evolution
DEoptimRDifferential Evolution Optimization in Pure R
depend.truncationStatistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data
depmixDependent Mixture Models
depmixS4Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depthDepth functions tools for multivariate analysis
depth.plotMultivariate Analogy of Quantiles
DepthProcStatistical Depth Functions for Multivariate Analysis
depthToolsDepth Tools Package
dequerAn R 'Deque' Container
DerivSymbolic Differentiation
derivmktsFunctions and R Code to Accompany Derivatives Markets
descManipulate DESCRIPTION Files
descomponerSeasonal Adjustment by Frequency Analysis
descrDescriptive Statistics
DescribeDisplayAn Interface to the DescribeDisplay GGobi Plugin
describerDescribe Data in R Using Common Descriptive Statistics
DescToolsTools for Descriptive Statistics
deseasonalizeOptimal deseasonalization for geophysical time series using AR fitting
designGGComputational tool for designing genetical genomics experiments
designGLMMFinding Optimal Block Designs for a Generalised Linear Mixed Model
designmatchConstruction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced by Design
desiRDesirability Functions for Ranking, Selecting, and Integrating Data
desirabilityDesirability Function Optimization and Ranking
desireDesirability functions in R
DESnowballBagging with Distance-based Regression for Differential Gene Expression Analyses
deSolveSolvers for Initial Value Problems of Differential Equations (ODE, DAE, DDE)
DESPEstimation of Diagonal Elements of Sparse Precision-Matrices
desplotPlotting Field Plans for Agricultural Experiments
detectAnalyzing Wildlife Data with Detection Error
detectorDetect Data Containing Personally Identifiable Information
deTestSetTestset for differential equations
DetMCDImplementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
DetRSuite of Deterministic and Robust Algorithms for Linear Regression
detrendeRStart the detrendeR Graphical User Interface (GUI)
DetSelA computer program to detect markers responding to selection
detzrcrCompare Detrital Zircon Suites
devEMFEMF Graphics Output Device
Devore7Data sets from Devore's "Prob and Stat for Eng (7th ed)"
devtoolsTools to Make Developing R Packages Easier
df2jsonConvert a dataframe to JSON
dfcombPhase I/II Adaptive Dose-Finding Design for Combination Studies
dfcrmDose-finding by the continual reassessment method
dfexploreExplore data.frames by plotting NA and classes of each variable
DFITDifferential Functioning of Items and Tests
dfmtaPhase I/II Adaptive Dose-Finding Design for MTA
dfoptimDerivative-Free Optimization
dgaCapture-Recapture Estimation using Bayesian Model Averaging
dggridRDiscrete Global Grids for R
dglarsDifferential Geometric LARS (dgLARS) method
dglmDouble Generalized Linear Models
dgmbSimulating Data for PLS Mode B Structural Models
dgofDiscrete Goodness-of-Fit Tests
dhglmDouble Hierarchical Generalized Linear Models
dHSICIndependence Testing via Hilbert Schmidt Independence Criterion
diagonalsBlock Diagonal Extraction or Replacement
diagramFunctions for visualising simple graphs (networks), plotting flow diagrams
DiagrammeRCreate Graph Diagrams and Flowcharts Using R
DiagrammeRsvgExport DiagrammeR Graphviz Graphs as SVG
DiagTest3GrpDiagnostic test summary measures for three ordinal groups
DiallelAnalysisRDiallel Analysis with R
diapltBeads Summary Plot of Ranges
diceCalculate probabilities of various dice-rolling events
DiceDesignDesigns of Computer Experiments
DiceEvalConstruction and Evaluation of Metamodels
DiceKrigingKriging Methods for Computer Experiments
DiceOptimKriging-Based Optimization for Computer Experiments
DiceViewPlot methods for computer experiments design and surrogate
dichromatColor Schemes for Dichromats
dicionariosIBGEDictionaries for reading microdata surveys from IBGE
DidacticBoostA Simple Implementation and Demonstration of Gradient Boosting
dielectricDefines some physical constants and dielectric functions commonly used in optics, plasmonics
diezeitR Interface to the ZEIT ONLINE Content API
DIFboostDetection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques
DiffCorrAnalyzing and Visualizing Differential Correlation Networks in Biological Data
diffdeppropCalculates Confidence Intervals for two Dependent Proportions
diffEqFunctions from the book Solving Differential Equations in R
diffeRMetrics of Difference for Comparing Pairs of Maps
diffIRTDiffusion IRT Models for Response and Response Time Data
diffrDisplay Differences Between Two Files using Codediff Library
diffractometryBaseline identification and peak decomposition for x-ray diffractograms
diffusionMapDiffusion map
DiffusionRgqdInference and Analysis for Generalized Quadratic Diffusions
DiffusionRimpInference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
DiffusionRjgqdInference and Analysis for Jump Generalized Quadratic Diffusions
DIFlassoA Penalty Approach to Differential Item Functioning in Rasch Models
difNLRDetection of Dichotomous Differential Item Functioning (DIF) by Non-Linear Regression Function
difRCollection of Methods to Detect Dichotomous Differential Item Functioning (DIF)
DIFtreeItem Focused Trees for the Identification of Items in Differential Item Functioning
digestCreate Compact Hash Digests of R Objects
Digiroo2An application programming interface for generating null models of social contacts based on individuals' space use
digitalPCREstimate Copy Number for Digital PCR
dilsData-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links
DIMEDIME (Differential Identification using Mixture Ensemble)
dinaBayesian Estimation of DINA Model
dinamicDiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
diptestHartigan's Dip Test Statistic for Unimodality - Corrected
DIRECTBayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
DirectionalDirectional Statistics
directlabelsDirect Labels for Multicolor Plots
directPADirection Analysis for Pathways and Kinases
DirichletRegDirichlet Regression in R
dirmultEstimation in Dirichlet-Multinomial distribution
DisakeDiscrete associated kernel estimators
discgolfDiscourse 'API' Client
disclapDiscrete Laplace Exponential Family
disclapmixDiscrete Laplace Mixture Inference using the EM Algorithm
DiscMLDiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
DiscreteInverseWeibullDiscrete Inverse Weibull Distribution
DiscreteLaplaceDiscrete Laplace Distributions
discreteMTPMultiple testing procedures for discrete test statistics
discreteRVCreate and Manipulate Discrete Random Variables
DiscreteWeibullDiscrete Weibull Distributions (Type 1 and 3)
discretizationData preprocessing, discretization for classification
discrimARTsDiscrimination of Alternative Reproductive Tactics (ARTs)
DiscriMinerTools of the Trade for Discriminant Analysis
discSurvDiscrete Time Survival Analysis
diseasemappingModelling Spatial Variation in Disease Risk for Areal Data
DisimForMixedCalculate Dissimilarity Matrix for Dataset with Mixed Attributes
diskImageRA Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays
dismoSpecies Distribution Modeling
disp2D2D Hausdorff and Simplex Dispersion Orderings
disparityfilterDisparity Filter Algorithm for Weighted Networks
dispmodDispersion models
disposablesCreate Disposable R Packages for Testing
dissUtilsUtilities for making pairwise comparisons of multivariate data
DistanceDistance Sampling Detection Function and Abundance Estimation
distance.sample.sizeCalculates Study Size Required for Distance Sampling
DistatisRDiSTATIS Three Way Metric Multidimensional Scaling
distcompComputations over Distributed Data without Aggregation
distfree.crDistribution-free confidence region (
distilleryMethod Functions for Confidence Intervals and to Distill Information from an Object
distoryDistance Between Phylogenetic Histories
distrObject Oriented Implementation of Distributions
distrDocDocumentation for 'distr' Family of R Packages
distrEllipseS4 classes for elliptically contoured distributions
distrExExtensions of Package 'distr'
DistributionUtilsDistribution Utilities
distrModObject Oriented Implementation of Probability Models
distromDistributed Multinomial Regression
distrRmetricsDistribution Classes for Distributions from Rmetrics
distrSimSimulation Classes Based on Package 'distr'
distrTeachExtensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
distrTEstEstimation and Testing Classes Based on Package 'distr'
divagisProvides tools for quality checks of georeferenced plant species accessions
DivEDiversity Estimator
diveMoveDive Analysis and Calibration
diverseDiversity Measures for Complex Systems
diversitreeComparative Phylogenetic Analyses of Diversification
diveRsityA Comprehensive, General Purpose Population Genetics Analysis Package
DiversityOccupancyBuilding Diversity Models from Multiple Species Occupancy Models
DiversitySamplerFunctions for re-sampling a community matrix to compute diversity indices at different sampling levels
DivMeltHRM Diversity Assay Analysis Tool
divoTools for Analysis of Diversity and Similarity in Biological Systems
dixonNearest Neighbour Contingency Table Analysis
DJLDistance Measure Based Judgment and Learning
dkDNADiffusion Kernels on a Set of Genotypes
dlmBayesian and Likelihood Analysis of Dynamic Linear Models
dlmapDetection Localization Mapping for QTL
dlmodelerGeneralized Dynamic Linear Modeler
DLMtoolData-Limited Methods Toolkit
dlnmDistributed Lag Non-Linear Models
dlsemDistributed-Lag Structural Equation Modelling
dlstatsDownload Stats of R Packages
dmaDynamic Model Averaging
dmlDistance Metric Learning in R
dmmDyadic Mixed Model for Pedigree Data
dModDynamic Modeling and Parameter Estimation in ODE Models
DMRDelete or Merge Regressors for linear model selection
dmtDependency Modeling Toolkit
DMwRFunctions and data for "Data Mining with R"
dnaDifferential Network Analysis
DNAprofilesDNA Profiling Evidence Analysis
DNAseqtestGenerating and Testing DNA Sequences
DNAtoolsTools for Analysing Forensic Genetic DNA Data
dncDynamic Network Clustering
DnEDistribution and Equation
dnetIntegrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
DNMFDiscriminant Non-Negative Matrix Factorization
DOBADAnalysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains
doByGroupwise Statistics, LSmeans, Linear Contrasts, Utilities
docoptCommand-Line Interface Specification Language
docopulaeOptimal Designs for Copula Models
documairAutomatic Documentation for R packages
docxtractrExtract Data Tables and Comments from Microsoft Word Documents
DodgeFunctions for Acceptance Sampling Ideas originated by H.F. Dodge
DODRDetection of Differential Rhythmicity
DoE.baseFull Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
DoE.wrapperWrapper package for design of experiments functionality
doFutureForeach Parallel Adaptor using the Future API of the 'future' Package
doMCForeach Parallel Adaptor for 'parallel'
DominanceADI (Average Dominance Index), Social Network Graphs with Dual Directions, and Music Notation Graph
dominoR Console Bindings for the 'Domino Command-Line Client'
doMPIForeach parallel adaptor for the Rmpi package
doParallelForeach Parallel Adaptor for the 'parallel' Package
doRedisForeach parallel adapter for the rredis package
doRNGGeneric Reproducible Parallel Backend for foreach Loops
DoseFindingPlanning and Analyzing Dose Finding Experiments
doSNOWForeach Parallel Adaptor for the 'snow' Package
dosresmetaPerforming Multivariate Dose-Response Meta-Analysis
dostatsCompute Statistics Helper Functions
DOTRender and Export DOT Graphs in R
DoTCDistribution of Typicality Coefficients
dotenvLoad Environment Variables from '.env'
dotwhiskerDot-and-Whisker Plots of Regression Results
DoubleConeTest against parametric regression function
DoubleExpSeqDifferential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
DOvalidationLocal Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
DowdFunctions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
downloaderDownload Files over HTTP and HTTPS
downscaleDownscaling Species Occupancy
dpaDynamic Path Approach
dpcRDigital PCR Analysis
dpglassoPrimal Graphical Lasso
dplRDendrochronology Program Library in R
dplRConConcordance for Dendroclimatology
dplyrA Grammar of Data Manipulation
dpmixsimDirichlet Process Mixture model simulation for clustering and image segmentation
dpmrData Package Manager for R
DPpackageBayesian nonparametric modeling in R
dprepData Pre-Processing and Visualization Functions for Classification
drMethods for Dimension Reduction for Regression
dratDrat R Archive Template
drawExpressionVisualising R syntax through graphics
DRaWRDiscriminative Random Walk with Restart
DrBatsData Representation: Bayesian Approach That's Sparse
drcAnalysis of Dose-Response Curves
DREGARRegularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
drfitDose-Response Data Evaluation
drgeeDoubly Robust Generalized Estimating Equations
DrillRR Driver for Apache Drill
DRIPDiscontinuous Regression and Image Processing
drLumiMultiplex Immunoassays Data Analysis
drmRegression and association models for repeated categorical data
drmdelDual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples
dropRAnalyze Drop Out of an Experiment or Survey
drsmoothDose-Response Modeling with Smoothing Splines
DrugClustImplementation of a Machine Learning Framework for Predicting Drugs Side Effects
dsDescriptive Statistics
dsampleDiscretization-Based Direct Random Sample Generation
DSBayesBayesian subgroup analysis in clinical trials
dseDynamic Systems Estimation (Time Series Package)
DSLDistributed Storage and List
dsliceDynamic Slicing
dsmDensity Surface Modelling of Distance Sampling Data
DSpatSpatial Modelling for Distance Sampling Data
DSsimDistance Sampling Simulations
dstUsing Dempster-Shafer Theory
DStreeRecursive Partitioning for Discrete-Time Survival Trees
DSviaDRMExploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms
DTA Wrapper of the JavaScript Library 'DataTables'
dtablesSimplifying Descriptive Frequencies and Statistics
DTComPairComparison of Binary Diagnostic Tests in a Paired Study Design
DTDADoubly truncated data analysis
dtiAnalysis of Diffusion Weighted Imaging (DWI) Data
DTKDunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
DTMCPackSuite of functions related to discrete-time discrete-state Markov Chains
dtplyrData Table Back-End for 'dplyr'
DTREstimation and Comparison of Dynamic Treatment Regimes
DTRlearnLearning Algorithms for Dynamic Treatment Regimes
DTRregDTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning
dttDiscrete Trigonometric Transforms
dtwDynamic Time Warping Algorithms
dtwclustTime Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
dtwSatTime-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis
dualScaleDual Scaling Analysis of Multiple Choice Data
dummiesCreate dummy/indicator variables flexibly and efficiently
dummyAutomatic Creation of Dummies with Support for Predictive Modeling
DunnettTestsSoftware implementation of step-down and step-up Dunnett test procedures
dunn.testDunn's Test of Multiple Comparisons Using Rank Sums
dupiRBayesian inference from count data using discrete uniform priors
dvfBmDiscrete variations of a fractional Brownian motion
DVHmetricsAnalyze Dose-Volume Histograms and Check Constraints
dvnAccess to Dataverse 3 APIs
DWregParametric Regression for Discrete Response
dygraphsInterface to 'Dygraphs' Interactive Time Series Charting Library
DYMDid You Mean?
dynTime Series Regression
DynamicDistributionDynamically visualized probability distributions and their moments
dynamicTreeCutMethods for Detection of Clusters in Hierarchical Clustering Dendrograms
dynatopmodelImplementation of the Dynamic TOPMODEL Hydrological Model
dynaTreeDynamic Trees for Learning and Design
dynBiplotGUIFull Interactive GUI for Dynamic Biplot in R
DynClustDenoising and clustering for dynamical image sequence (2D or 3D)+T
dynCorrDynamic Correlation Package
dyniaFit Dynamic Intervention Model
dynlmDynamic Linear Regression
DynNomDynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models
dynpredCompanion Package to "Dynamic Prediction in Clinical Survival Analysis"
dynrDynamic Modeling in R
dynRBDynamic Range Boxes
dynsimDynamic Simulations of Autoregressive Relationships
dynsurvDynamic Models for Survival Data
DynTxRegimeMethods for Estimating Dynamic Treatment Regimes
DySeqFunctions for Dyadic Sequence Analyses
e1071Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
eafPlots of the Empirical Attainment Function
earlywarningsEarly Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
earthMultivariate Adaptive Regression Splines
EasyABCEfficient Approximate Bayesian Computation Sampling Schemes
easyanovaAnalysis of variance and other important complementary analyzes
easyformatrTools for Building R Formats
EasyMARKUtility functions for working with mark-recapture data
easynlsEasy nonlinear model
easypackagesEasy Loading and Installing of Packages
easypowerSample Size Estimation for Experimental Designs
easyPubMedSearch and Retrieve Scientific Publication Records from Pubmed
EasyStrataEvaluation of stratified genome-wide association meta-analysis results
easyVerificationEnsemble Forecast Verification for Large Data Sets
ebaElimination-by-Aspects Models
ebalEntropy reweighting to create balanced samples
EbayesThreshEmpirical Bayes Thresholding and Related Methods
ebdbNetEmpirical Bayes Estimation of Dynamic Bayesian Networks
EBENEmpirical Bayesian Elastic Net
ebGenotypingGenotyping and SNP Detection using Next Generation Sequencing Data
EBglmnetEmpirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
EBMAforecastEnsemble BMA Forecasting
EBSExact Bayesian Segmentation
ebSNPGenotyping and SNP calling using single-sample next generation sequencing data
ecbProgrammatic Access to the European Central Bank's Statistical Data Warehouse (SDW)
ECctmcSimulation from Endpoint-Conditioned Continuous Time Markov Chains
ecdElliptic Distribution and Lambda Option Pricing Model
EcdatData Sets for Econometrics
ecespaFunctions for Spatial Point Pattern Analysis
EcfunFunctions for Ecdat
ECharts2ShinyEmbedding Charts Generated with ECharts Library into Shiny Applications
ecipexEfficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
ecoEcological Inference in 2x2 Tables
ecodistDissimilarity-based functions for ecological analysis
ecoengineProgrammatic Interface to the API Serving UC Berkeley's Natural History Data
EcoGeneticsSpatial Analysis of Phenotypic, Genotypic and Environmental Data
EcoHydRologyA community modeling foundation for Eco-Hydrology
ecolMod"A practical guide to ecological modelling - using R as a simulation platform"
EconDemandGeneral Analysis of Various Economics Demand Systems
ecoregEcological Regression using Aggregate and Individual Data
ecoretrieverR Interface to the EcoData Retriever
ecosimToolbox for Aquatic Ecosystem Modeling
EcoSimRNull Model Analysis for Ecological Data
ECOSolveREmbedded Conic Solver in R
ecospaceSimulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
ecospatSpatial Ecology Miscellaneous Methods
ecotoxicologyMethods for Ecotoxicology
EcoTrophEcoTroph R package
ecovalProcedures for Ecological Assessment of Surface Waters
EcoVirtualSimulation of Ecological Models
ecpNon-Parametric Multiple Change-Point Analysis of Multivariate Data
edccEconomic Design of Control Charts
edciEdge Detection and Clustering in Images
edeaRExploratory and Descriptive Event-Based Data Analysis
edeREmail Data Extraction Using R
edesignMaximum Entropy Sampling
edfRead Data from European Data Format (EDF and EDF+) Files
EDFIREstimating Discrimination Factors
edfReaderReading EDF(+) and BDF(+) Files
edgarPlatform for EDGAR Filing Management
edgebundleRCircle Plot with Bundled Edges
edgeCorrSpatial Edge Correction
edgeRunMore Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
EDISONNetwork Reconstruction and Changepoint Detection
EditImputeContSimultaneous Edit-Imputation for Continuous Microdata
editrulesParsing, Applying, and Manipulating Data Cleaning Rules
EDREstimation of the effective dimension reduction (EDR) space
edrGraphicalToolsProvides tools for dimension reduction methods
eechidnaExploring Election and Census Highly Informative Data Nationally for Australia
eegAnalysisTools for analysis and classification of electroencephalography (EEG) data
eegkitToolkit for Electroencephalography Data
eegkitdataData for package eegkit
eelExtended Empirical Likelihood
EEMRead and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
eemRTools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data
eeptoolsConvenience Functions for Education Data
EFDRWavelet-Based Enhanced FDR for Signal Detection in Noisy Images
EffectLiteRAverage and Conditional Effects
effectsEffect Displays for Linear, Generalized Linear, and Other Models
EffectsRelBaselineTest changes of a grouped response relative to baseline
EffectStarsVisualization of Categorical Response Models
EffectTreatPrediction of Therapeutic Success
efflogThe Causal Effects for a Causal Loglinear Model
effsizeEfficient Effect Size Computation
efreadrRead European Fluxes CSV Files
egaError Grid Analysis
egcmEngle-Granger Cointegration Models
eggCountsHierarchical Modelling of Faecal Egg Counts
egonetTool for ego-centric measures in Social Network Analysis
EGRETExploration and Graphics for RivEr Trends (EGRET)
EGRETciExploration and Graphics for RivEr Trends (EGRET) Confidence Intervals
ehaEvent History Analysis
eHOFExtended HOF (Huisman-Olff-Fresco) Models
eiEcological Inference
EIAdataR Wrapper for the Energy Information Administration (EIA) API
eiCompareCompares EI, Goodman, RxC Estimates
eigeninvGenerates (dense) matrices that have a given set of eigenvalues
eigenmodelSemiparametric factor and regression models for symmetric relational data
eigenprcompComputes confidence intervals for principal components
EILAEfficient Inference of Local Ancestry
eiPackeiPack: Ecological Inference and Higher-Dimension Data Management
eiveAn algorithm for reducing errors-in-variable bias in simple linear regression
eiwildEcological Inference with individual and aggregate data
ELTwo-sample Empirical Likelihood
elassoEnhanced Least Absolute Shrinkage and Selection Operator Regression Model
elasticGeneral Purpose Interface to 'Elasticsearch'
elasticnetElastic-Net for Sparse Estimation and Sparse PCA
elecCollection of functions for statistical election audits
elec.stratFunctions for election audits using stratified random samples
ElemStatLearnData Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
elexrLoad Associated Press Election Results with Elex
elliplotEllipse Summary Plot of Quantiles
ellipseFunctions for drawing ellipses and ellipse-like confidence regions
ellipticElliptic Functions
elmNNImplementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
ELMRExtreme Machine Learning (ELM)
EloChoicePreference Rating for Visual Stimuli Based on Elo Ratings
EloRatingAnimal Dominance Hierarchies by Elo Rating
elrmExact Logistic Regression via MCMC
ElstonStewartElston-Stewart Algorithm
ELTExperience Life Tables
ELYPEmpirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
EMAEasy Microarray data Analysis
EMbCExpectation-Maximization Binary Clustering
embryogrowthTools to Analyze the Thermal Reaction Norm of Embryo Growth
EMCEvolutionary Monte Carlo (EMC) algorithm
EMClusterEM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
EMDEmpirical Mode Decomposition and Hilbert Spectral Analysis
emdbookSupport Functions and Data for "Ecological Models and Data"
emdistEarth Mover's Distance
emgExponentially Modified Gaussian (EMG) Distribution
emilEvaluation of Modeling without Information Leakage
emIRTEM Algorithms for Estimating Item Response Theory Models
EmiStatREstimation of Wastewater Emissions in Combined Sewer Systems
emmaEvolutionary model-based multiresponse approach
EMMAgeoEnd-Member Modelling of Grain-Size Data
emme2Read and Write to an EMME/2 databank
EMMIXcontrastsContrasts in mixed effects for EMMIX model with random effects
EMMIXskewThe EM Algorithm and Skew Mixture Distribution
EMMIXuskewFitting Unrestricted Multivariate Skew t Mixture Models
EMMLiA Maximum Likelihood Approach to the Analysis of Modularity
EMMREMLFitting Mixed Models with Known Covariance Structures
emoaEvolutionary Multiobjective Optimization Algorithms
emojifontEmoji Fonts for using in R
emovEye Movement Analysis Package for Fixation and Saccade Detection
EMPExpected Maximum Profit Classification Performance Measure
EmpiricalCalibrationRoutines for Performing Empirical Calibration of Observational Study Estimates
empiricalFDR.DESeq2Simulation-Based False Discovery Rate in RNA-Seq
emplikEmpirical Likelihood Ratio for Censored/Truncated Data
emplik2Empirical Likelihood Ratio Test for Two Samples with Censored Data
EMSCExtended Multiplicative Signal Correction
EMTExact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
emulatorBayesian emulation of computer programs
emuRMain Package of the EMU Speech Database Management System
EMVCEntropy Minimization over Variable Clusters (EMVC)
enaRTools for Ecological Network Analysis
endogMNPR Package for Fitting Multinomial Probit Models with Endogenous Selection
endorseR Package for Analyzing Endorsement Experiments
energyE-statistics (energy statistics)
energyrData Published by the United States Federal Energy Regulatory Commission
englishTranslate integers into English
EngrExptData sets from "Introductory Statistics for Engineering Experimentation"
engsoccerdataEnglish and European Soccer Results 1871-2016
enigmaClient for the 'Enigma' 'API'
ENiRGEcological Niche in R and GRASS
ENMevalAutomated Runs and Evaluations of Ecological Niche Models
ENmiscNeuwirth miscellaneous
enplsEnsemble Partial Least Squares Regression
EnQuireRA package dedicated to questionnaires
enRichAn R Package for the Analysis of Multiple ChIP-Seq Data
enrichvsEnrichment assessment of virtual screening approaches
EnsembleBaseExtensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
ensembleBMAProbabilistic Forecasting using Ensembles and Bayesian Model Averaging
EnsembleCVExtensible Package for Cross-Validation-Based Integration of Base Learners
ensembleMOSEnsemble Model Output Statistics
EnsemblePCRegExtensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning
EnsemblePenRegExtensible Classes and Methods for Penalized-Regression-based Integration of Base Learners
ensurerEnsure Values at Runtime
entropartEntropy Partitioning to Measure Diversity
entropyEstimation of Entropy, Mutual Information and Related Quantities
EntropyEstimationEstimation of Entropy and Related Quantities
EntropyExplorerTools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression
enveomics.RVarious R Functions from the Kostas Lab
enviPatIsotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
enviPickPeak Picking for High Resolution Mass Spectrometry Data
EnviroStatStatistical Analysis of Environmental Space-Time Processes
envlpasterEnveloping the Aster Model
EnvNicheRNiche Estimation
EnvStatsPackage for Environmental Statistics, Including US EPA Guidance
epadeEasy Plots
epandistStatistical Functions for the Censored and Uncensored Epanechnikov Distribution
epanetReaderRead Epanet Files into R
EPGLMGaussian Approximation of Bayesian Binary Regression Models
EpiA Package for Statistical Analysis in Epidemiology
epibasixElementary Epidemiological Functions for Epidemiology and Biostatistics
EpiBayesImplements Hierarchical Bayesian Models for Epidemiological Applications
EpiContactTraceEpidemiological Tool for Contact Tracing
epiDisplayEpidemiological Data Display Package
EpiDynamicsDynamic Models in Epidemiology
EpiEstimEpiEstim: a package to estimate time varying reproduction numbers from epidemic curves
epifitFlexible Modelling Functions for Epidemiological Data Analysis
EpiModelMathematical Modeling of Infectious Disease
epinetEpidemic/Network-Related Tools
epiRTools for the Analysis of Epidemiological Data
episensrBasic Sensitivity Analysis of Epidemiological Results
episplineDensityDensity Estimation with Soft Information by Exponential Epi-splines
epitoolsEpidemiology Tools
EpiWeekConversion Between Epidemiological Weeks and Calendar Dates
EplotPlotting longitudinal series
epocEPoC (Endogenous Perturbation analysis of Cancer)
eprEasy polynomial regression
EQLExtended-Quasi-Likelihood-Function (EQL)
eqs2lavaanEQS Output Conversion to lavaan Functions
eqtlTools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
equateObserved-Score Linking and Equating
equateIRTDirect, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods
equivalenceProvides Tests and Graphics for Assessing Tests of Equivalence
erahAutomated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics
erboostNonparametric Multiple Expectile Regression via ER-Boost
ererEmpirical Research in Economics with R
ergmFit, Simulate and Diagnose Exponential-Family Models for Networks
ergm.countFit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
ergm.egoFit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data
ergm.graphletsERG Modeling Based on Graphlet Properties
ergmharrisLocal Health Department network data set
ergm.rankFit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data
ergm.usertermsUser-specified terms for the statnet suite of packages
eRmExtended Rasch Modeling
ERPSignificance Analysis of Event-Related Potentials Data
erp.easyEvent-Related Potential (ERP) Data Exploration Made Easy
erpREvent-related potentials (ERP) analysis, graphics and utility functions
errintBuild Error Intervals
ESEdge Selection
esaBcvEstimate Number of Latent Factors and Factor Matrix for Factor Analysis
escEffect Size Computation for Meta Analysis
ESEAESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
ESGESG - A package for asset projection
ESGtoolkitToolkit for the simulation of financial assets and interest rates models
ESKNNEnsemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation
estatapiR Interface to e-Stat API
EstCRMCalibrating Parameters for the Samejima's Continuous IRT Model
EstHerEstimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection
estimabilityTools for Assessing Estimability of Linear Predictions
estoutEstimates Output
EstSimPDMPEstimation and Simulation for PDMPs
etableEasy Table
ETASModeling Earthquake Data Using ETAS Model
etasFLPMixed FLP and ML Estimation of ETAS Space-Time Point Processes
ETCEquivalence to control
etlExtract-Transfer-Load Framework for Medium Data
ETLUtilsUtility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data
etmEmpirical Transition Matrix
etmaEpistasis Test in Meta-Analysis
etrunctComputes Moments of Univariate Truncated t Distribution
eulerianeulerian: A package to find eulerian paths from graphs
euroMixCalculations for DNA Mixtures
europepmcR Interface to the Europe PubMed Central RESTful Web Service
EurosarcBayesBayesian Single Arm Sample Size Calculation Software
eurostatTools for Eurostat Open Data
evaExtreme Value Analysis with Goodness-of-Fit Testing
EvalEstDynamic Systems Estimation - Extensions
evaluateParsing and Evaluation Tools that Provide More Details than the Default
EvapotranspirationModelling Actual, Potential and Reference Crop Evapotranspiration
evclassEvidential Distance-Based Classification
evclustEvidential Clustering
EvCombREvidence Combination in R
evdFunctions for Extreme Value Distributions
evdbayesBayesian Analysis in Extreme Value Theory
eVennA Powerful Tool to Quickly Compare Huge Lists and Draw Venn Diagrams
eventIntervalSequential Event Interval Analysis
eventsStore and manipulate event data
eventstudiesEvent study and extreme event analysis
evirExtreme Values in R
evmixExtreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
evobiRComparative and Population Genetic Analyses
evolqgTools for Evolutionary Quantitative Genetics
evolvabilityCalculation of Evolvability Parameters
EvomorphEvolutionary Morphometric Simulation
evoperEvolutionary Parameter Estimation for 'Repast Simphony' Models
EvoRAGEvolutionary Rates Across Gradients
evt0Mean of order p, peaks over random threshold Hill and high quantile estimates
evtreeEvolutionary Learning of Globally Optimal Trees
EWEdgeworth Expansion
EWGoFGoodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions
ExactUnconditional Exact Test
exact2x2Exact Conditional Tests and Confidence Intervals for 2x2 tables
exactciExact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases
ExactCIdiffInductive Confidence Intervals for the difference between two proportions
exactLoglinTestMonte Carlo Exact Tests for Log-linear models
exactmetaExact fixed effect meta analysis
ExactPathExact solution paths for regularized LASSO regressions with L_1 penalty
exactRankTestsExact Distributions for Rank and Permutation Tests
examsAutomatic Generation of Exams in R
ExceedanceToolsConfidence regions for exceedance sets and contour lines
excel.linkConvenient Data Exchange with Microsoft Excel
exConInteractive Exploration of Contour Data
excursionsExcursion Sets and Contour Credibility Regions for Random Fields
exifRead EXIF Metadata from JPEGs
exifrEXIF Image Data in R
ExomeDepthCalls Copy Number Variants from Targeted Sequence Data
expandsExpanding Ploidy and Allele-Frequency on Nested Subpopulations
ExpDEModular Differential Evolution for Experimenting with Operators
ExpDesExperimental Designs package
ExpDes.ptPacote Experimental Designs (Portuguese)
expectregExpectile and Quantile Regression
experimentexperiment: R package for designing and analyzing randomized experiments
expertModeling without data using expert opinion
ExplainPredictionExplanation of Predictions for Classification and Regression Models
explorInteractive Interfaces for Results Exploration
exploreRTools for Quickly Exploring Data
expmMatrix Exponential
expoRkitExpokit in R
ExPositionExploratory analysis with the singular value decomposition
expoTreeCalculate density dependent likelihood of a phylogenetic tree
exppSpatial analysis of extra-pair paternity
expsmoothData Sets from "Forecasting with Exponential Smoothing"
expssSome Useful Functions from Spreadsheets and 'SPSS' Statistics
exptestTests for Exponentiality
exreportFast, Reliable and Elegant Reproducible Research
EXRQExtreme Regression of Quantiles
exsicConvenience Functions for Botanists to Create Specimens Indices
ExtDistExtending the Range of Functions for Probability Distributions
extfunnelAdditional Funnel Plot Augmentations
extlassoMaximum penalized likelihood estimation with extended lasso penalty
extraBinomialExtra-binomial approach for pooled sequencing data
extracatCategorical Data Analysis and Visualization
extraDistrAdditional Univariate and Multivariate Distributions
extrafontTools for using fonts
extrafontdbPackage for holding the database for the extrafont package
extraTreesExtremely Randomized Trees (ExtraTrees) Method for Classification and Regression
ExtremeBoundsExtreme Bounds Analysis (EBA)
extremefitEstimation of Extreme Conditional Quantiles and Probabilities
extRemesExtreme Value Analysis
extremeStatExtreme Value Statistics and Quantile Estimation
extremevaluesUnivariate Outlier Detection
extremogramEstimation of Extreme Value Dependence for Time Series Data
extWeibQuantEstimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture
eyelinkerLoad Raw Data from Eyelink Eye Trackers
eyetrackingEyetracking Helper Functions
eyetrackingREye-Tracking Data Analysis
ezEasy Analysis and Visualization of Factorial Experiments
ezecEasy Interface to Effective Concentration Calculations
ezglmselects significant non-additive interaction between two variables using fast GLM implementation
ezknitrAvoid the Typical Working Directory Pain When Using 'knitr'
ezsimprovide an easy to use framework to conduct simulation
ezsummaryGenerate Data Summary in a Tidy Format
faceFast Covariance Estimation for Sparse Functional Data
FacPadBayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
FactMixtAnalysisFactor Mixture Analysis with covariates
FACTMLEMaximum Likelihood Factor Analysis
FactoClassCombination of Factorial Methods and Cluster Analysis
factoextraExtract and Visualize the Results of Multivariate Data Analyses
FactoMineRMultivariate Exploratory Data Analysis and Data Mining
factorplotGraphical Presentation of Simple Contrasts
factorQRBayesian quantile regression factor models
FactoshinyPerform Factorial Analysis from 'FactoMineR' with a Shiny Application
FACTscorerScores the FACT and FACIT Family of Patient-Reported Outcome Measures
factualRthin wrapper for the server API
FADAVariable Selection for Supervised Classification in High Dimension
FAdistDistributions that are Sometimes Used in Hydrology
FahrmeirData from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz
failFile Abstraction Interface Layer (FAIL)
FAiRFactor Analysis in R
faisalconjointFaisal Conjoint Model: A New Approach to Conjoint Analysis
fakeRSimulates Data from a Data Frame of Different Variable Types
falconFinding Allele-Specific Copy Number in Next-Generation Sequencing Data
falconxFinding Allele-Specific Copy Number in Whole-Exome Sequencing Data
fameInterface for FAME Time Series Database
FamEventSimulation of Time-to-Event Family Data and Penetrance Estimation
FamiliasProbabilities for Pedigrees Given DNA Data
FAMILYA Convex Formulation for Modeling Interactions with Strong Heredity
FAmleMaximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
FAMTFactor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
fancPenalized Likelihood Factor Analysis via Nonconvex Penalty
fANCOVANonparametric Analysis of Covariance
fancycutA Fancy Version of 'base::cut'
fanovaGraphBuilding Kriging Models from FANOVA Graphs
fanplotVisualisation of Sequential Probability Distributions Using Fan Charts
FAOSTATDownload Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations
faoutlierInfluential Case Detection Methods for Factor Analysis and Structural Equation Models
farModelization for Functional AutoRegressive Processes
farawayFunctions and Datasets for Books by Julian Faraway
fArmaARMA Time Series Modelling
farsiTranslate integers into persian
fAsianOptionsEBM and Asian Option Valuation
fAssetsRmetrics - Analysing and Modelling Financial Assets
fastImplementation of the Fourier Amplitude Sensitivity Test (FAST)
fastAdaboosta Fast Implementation of Adaboost
FastBandCholFast Estimation of a Covariance Matrix by Banding the Cholesky Factor
fastclimeA Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector
fastclusterFast Hierarchical Clustering Routines for R and Python
fastcoxLasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
fastdigestFast, Low Memory-Footprint Digests of R Objects
fasterasterRaster Image Processing and Vector Recognition
fastGHQuadFast Rcpp implementation of Gauss-Hermite quadrature
FastGPEfficiently Using Gaussian Processes with Rcpp and RcppEigen
fastGraphFast Drawing and Shading of Graphs of Statistical Distributions
FastHCSRobust Algorithm for Principal Component Analysis
fastHICAHierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis
fastICAFastICA Algorithms to perform ICA and Projection Pursuit
FastImputationLearn from Training Data then Quickly Fill in Missing Data
FastKMA Fast Multiple-Kernel Method Based on a Low-Rank Approximation
FastKNNFast k-Nearest Neighbors
fastMFast Computation of Multivariate M-estimators
fastmatchFast match() function
FastPCSFastPCS Robust Fit of Multivariate Location and Scatter
fastpseudoFast Pseudo Observations
fastRFoundations and Applications of Statistics Using R
FastRCSFits the FastRCS Robust Multivariable Linear Regression Model
FastRWebFast Interactive Framework for Web Scripting Using R
fastSOMFast Calculation of Spillover Measures
fasttimeFast Utility Function for Time Parsing and Conversion
fat2LpolyTwo-Locus Family-Based Association Test with Polytomic Outcome
FatTailsRKiener Distributions and Fat Tails in Finance
favnumsA Dataset of Favourite Numbers
FAwRFunctions and Datasets for "Forest Analytics with R"
fBasicsRmetrics - Markets and Basic Statistics
fbatiGene by Environment Interaction and Conditional Gene Tests for Nuclear Families
FBFsearchAlgorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors
FBNFISH Based Normalization and Copy Number inference of SNP microarray data
fBondsBonds and Interest Rate Models
fbRadsAnalyzing and Managing Facebook Ads from R
fbRanksAssociation Football (Soccer) Ranking via Poisson Regression
fbrocFast Algorithms to Bootstrap Receiver Operating Characteristics Curves
fcdFused Community Detection
fCertificatesBasics of Certificates and Structured Products Valuation
FCGRFatigue Crack Growth in Reliability
fclustFuzzy Clustering
FCMapperFuzzy Cognitive Mapping
FCNN4RFast Compressed Neural Networks for R
fCopulaeRmetrics - Bivariate Dependence Structures with Copulae
fcrosA Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations
FDMeasuring functional diversity (FD) from multiple traits, and other tools for functional ecology
fdaFunctional Data Analysis
fdakmaFunctional Data Analysis: K-Mean Alignment
fdaMixedFunctional data analysis in a mixed model framework
fdapaceFunctional Data Analysis and Empirical Dynamics
fdaPDEFunctional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations
fdasrvfElastic Functional Data Analysis
fdatestInterval Testing Procedure for Functional Data
fda.uscFunctional Data Analysis and Utilities for Statistical Computing
FDboostBoosting Functional Regression Models
fdcovAnalysis of Covariance Operators
FDGcopulasMultivariate Dependence with FDG Copulas
fdrciPermutation-based FDR Point and Confidence Interval Estimation
fdrDiscreteNullFalse Discovery Rate Procedure Under Discrete Null Distributions
FDRregFalse discovery rate regression
FDRsampsizeCompute Sample Size that Meets Requirements for Average Power and FDR
fdrtoolEstimation of (Local) False Discovery Rates and Higher Criticism
fdsFunctional data sets
fdthFrequency Distribution Tables, Histograms and Polygons
FeaLectScores Features for Feature Selection
featherR Bindings to the Feather 'API'
featureLocal Inferential Feature Significance for Multivariate Kernel Density Estimation
FeatureHashingCreates a Model Matrix via Feature Hashing with a Formula Interface
featuresFeature Extraction for Discretely-Sampled Functional Data
fechnerFechnerian Scaling of Discrete Object Sets
FedDataFunctions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
federalregisterClient Package for the U.S. Federal Register API
FeedbackTSAnalysis of Feedback in Time Series
FENmlmFixed Effects Nonlinear Maximum Likelihood Models
fermicatsRFermi Large Area Telescope Catalogs
fExoticOptionsExotic Option Valuation
fExpressCertificatesfExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
fExtremesRmetrics - Extreme Financial Market Data
ffmemory-efficient storage of large data on disk and fast access functions
ffbaseBasic Statistical Functions for Package 'ff'
FFDFreedom from Disease
FFieldForce field simulation for a set of points
ffmanovaFifty-fifty MANOVA
FFTreesGenerate, Visualise, and Compare Fast and Frugal Decision Trees
fftwFast FFT and DCT based on FFTW
fftwtoolsWrapper for FFTW3: Includes 1-D, Univariate and Multivariate, and 2-D Transform
fgacGeneralized Archimedean Copula
FGalgorithmFlury and Gautschi algorithms
fGarchRmetrics - Autoregressive Conditional Heteroskedastic Modelling
FgmutilsForest Growth Model Utilities
FGNFractional Gaussian Noise and power law decay time series model fitting
fgofFast Goodness-of-fit Test
fgptFloating Grid Permutation Technique
FGSGFeature Grouping and Selection Over an Undirected Graph
fguiFunction GUI
fheatmapFantastic Heatmap
FHtestTests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class
FIProvide functions for forest inventory calculations
FIACHRetrospective Noise Control for fMRI
fICAClassical, Reloaded and Adaptive FastICA Algorithms
fieldsTools for Spatial Data
FieldSimRandom Fields (and Bridges) Simulations
fieryA Lightweight and Flexible Web Framework
fiferA collection of miscellaneous functions
filehashSimple Key-Value Database
filehashSQLiteSimple key-value database using SQLite
filematrixFile-Backed Matrix Class with Convenient Read and Write Access
filenamerEasy Management of File Names
fImportRmetrics - Economic and Financial Data Import
financialSolving financial problems in R
FinancialInstrumentFinancial Instrument Model Infrastructure for R
FinAsymClassifies implicit trading activity from market quotes and computes the probability of informed trading
FinCalTime Value of Money, Time Series Analysis and Computational Finance
FinCovRegularizationCovariance Matrix Estimation and Regularization for Finance
FindAllRootsFind all root(s) of the equation and Find root(s) of the equation by dichotomy
FindItFinding Heterogeneous Treatment Effects
FindMinICFind Models with Minimum IC
findpythonPython tools to find an acceptable python binary
fingerprintFunctions to operate on binary fingerprint data
finiteruinprobComputation of the probability of ruin within a finite time horizon
finreportrFinancial Data from U.S. Securities and Exchange Commission
FinTSCompanion to Tsay (2005) Analysis of Financial Time Series
FisherEMThe Fisher-EM algorithm
fisheyeRFisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
FisHiCalIterative FISH-based Calibration of Hi-C Data
fishmethodsFishery Science Methods and Models in R
fishModFits Poisson-sum-of-Gammas GLMs, Tweedie GLMs, and delta log-normal mdoels
fishmovePrediction of Fish Movement Parameters
FITTranscriptomic Dynamics Models in Field Conditions
fit4NMNONMEM platform
FitARSubset AR Model Fitting
FitARMAFitARMA: Fit ARMA or ARIMA using fast MLE algorithm
fitbitScraperScrapes Data from Fitbit
fitcoachPersonalized Coach for Fitbit and R API
fitdistrplusHelp to Fit of a Parametric Distribution to Non-Censored or Censored Data
fitDRCFitting Density Ratio Classes
FITSioFITS (Flexible Image Transport System) utilities
fitTetrafitTetra is an R package for assigning tetraploid genotype scores
FKFFast Kalman Filter
flaccoFeature-Based Landscape Analysis of Continuous and Constraint Optimization Problems
flamFits Piecewise Constant Models with Data-Adaptive Knots
flanFLuctuation ANalysis on Mutation Models
flareFamily of Lasso Regression
flarsFunctional LARS
flashClustImplementation of optimal hierarchical clustering
flexclustFlexible Cluster Algorithms
flexCWMFlexible Cluster-Weighted Modeling
flexdashboardR Markdown Format for Flexible Dashboards
flexmixFlexible Mixture Modeling
FlexParamCurveTools to Fit Flexible Parametric Curves
flexPMFlexible Parametric Models for Censored and Truncated Data
flexrsurvFlexible Relative Survival
flexsurvFlexible Parametric Survival and Multi-State Models
FLIMFarewell’s Linear Increments Model
flipMultivariate Permutation Tests
FLLatFused Lasso Latent Feature Model
floraTools for Interacting with the Brazilian Flora 2020
flowDivCytometric Diversity Indices from 'FlowJo' Workspaces
flowerTools for characterizing flowering traits
flowfieldForecasts future values of a univariate time series
flowrStreamlining Design and Deployment of Complex Workflows
flowsFlow Selection and Analysis
FlowScreenDaily Streamflow Trend and Change Point Screening
FLRFuzzy Logic Rule Classifier
flsaPath algorithm for the general Fused Lasso Signal Approximator
FLSSSMultithreaded Fixed Size Subset Sum with Bounded Error in Multidimensional Real Domain
FluryData Sets from Flury, 1997
fluxFlux rate calculation from dynamic closed chamber measurements
fmaData Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998)
FMEA Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis
FMPFiltered Monotonic Polynomial IRT Models
fmriAnalysis of fMRI experiments
fmrsVariable Selection in Finite Mixture of AFT Regression and FMR
fmsbFunctions for Medical Statistics Book with some Demographic Data
FMsmsnRegRegression Models with Finite Mixtures of Skew Heavy-Tailed Errors
FMStableFinite Moment Stable Distributions
fmtVariance estimation of FMT method (Fully Moderated t-statistic)
fMultivarRmetrics - Analysing and Modeling Multivariate Financial Return Distributions
FNNFast Nearest Neighbor Search Algorithms and Applications
fNonlinearNonlinear and Chaotic Time Series Modelling
fobagreedy variable selection
fontcmComputer Modern font for use with extrafont package
foodwebvisualisation and analysis of food web networks
fOptionsRmetrics - Pricing and Evaluating Basic Options
foramsForaminifera and Community Ecology Analyses
foreachProvides Foreach Looping Construct for R
ForeCAForecastable Component Analysis
forecastForecasting Functions for Time Series and Linear Models
ForecastCombinationsForecast Combinations
forecastHybridConvenient Functions for Ensemble Time Series Forecasts
forecThetaForecasting Time Series by Theta Models
foregaFloating-Point Genetic Algorithms with Statistical Forecast Based Inheritance Operator
foreignRead Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
forensicStatistical Methods in Forensic Genetics
forensimStatistical tools for the interpretation of forensic DNA mixtures
forestFloorVisualizes Random Forests with Feature Contributions
forestinventoryDesign-Based Global and Small-Area Estimations for Multiphase Forest Inventories
forestmodelForest Plots from Regression Models
forestplotAdvanced Forest Plot Using 'grid' Graphics
ForImpImputation of Missing Values Through a Forward Imputation Algorithm
ForITFunctions from the 2nd Italian Forest Inventory (INFC)
FormalSeriesElementary arithemtic in formal series rings
formatRFormat R Code Automatically
formattableFormattable Data Structures
FormulaExtended Model Formulas
formula.toolsUtilities for Formulas, Expressions, Calls and Other Objects
fortunesR Fortunes
forwardForward search
ForwardSearchForward Search using asymptotic theory
fossilPalaeoecological and Palaeogeographical Analysis Tools
fourierinComputes Numeric Fourier Integrals
fourPNOBayesian 4 Parameter Item Response Model
FourScoresFourScores - A game for two players
fpcFlexible Procedures for Clustering
fpcaRestricted MLE for Functional Principal Components Analysis
fpCompareReliable Comparison of Floating Point Numbers
FPDclusteringPD-Clustering and Factor PD-Clustering
fPortfolioRmetrics - Portfolio Selection and Optimization
fpowComputing the noncentrality parameter of the noncentral F distribution
fppData for "Forecasting: principles and practice"
fptdApproxApproximation of First-Passage-Time Densities for Diffusion Processes
fracdiffFractionally differenced ARIMA aka ARFIMA(p,d,q) models
fracprolifFraction Proliferation via a Quiescent Growth Model
fractalFractal Time Series Modeling and Analysis
fractaldimEstimation of fractal dimensions
FractalParameterEstimationEstimation of Parameters p and q for Randomized Sierpinski Carpet for [p-p-p-q]-Model
fractalrockGenerate fractal time series with non-normal returns distribution
FRACTIONNumeric number into fraction
fractionalVulgar Fractions in R
FragmanFragment Analysis in R
frailtyHLFrailty Models via H-likelihood
frailtypackGeneral Frailty Models: Shared, Joint and Nested Frailty Models with Prediction
frailtySurvGeneral Semiparametric Shared Frailty Model
frairTools for Functional Response Analysis
Frames2Estimation in Dual Frame Surveys
francDetect the Language of Text
FRAPOFinancial Risk Modelling and Portfolio Optimisation with R
FRBFast and Robust Bootstrap
frbsFuzzy Rule-Based Systems for Classification and Regression Tasks
FRCCFast Regularized Canonical Correlation Analysis
freeknotsplinesFree-Knot Splines
FreeSortRFree Sorting Data Analysis
freestatsStatistical algorithms used in common data mining course
FREGATFamily REGional Association Tests
fRegressionRmetrics - Regression Based Decision and Prediction
FREQFREQ: Estimate population size from capture frequencies
freqdomFrequency Domain Analysis for Multivariate Time Series
freqMAPFrequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
freqparcoordNovel Methods for Parallel Coordinates
FreqProfFrequency Profiles Computing and Plotting
freqweightsWorking with Frequency Tables
FRESA.CADFeature Selection Algorithms for Computer Aided Diagnosis
FrF2Fractional Factorial designs with 2-level factors
FrF2.catlg128Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
frmRegression Analysis of Fractional Responses
frmhetRegression Analysis of Fractional Responses Under Unobserved Heterogeneity
frmpdRegression Analysis of Panel Fractional Responses
frmqaThe Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
fromoFast Robust Moments
frontierStochastic Frontier Analysis
frontilesPartial Frontier Efficiency Analysis
frtFull Randomization Test
FSASimple Fisheries Stock Assessment Methods
FSAdataData to Support Fish Stock Assessment (FSA) Package
fscaretAutomated Feature Selection from 'caret'
FSelectorSelecting Attributes
fsiaImport and Analysis of OMR Data from FormScanner
FSInteractFast Searches for Interactions
fslrWrapper Functions for FSL (FMRIB Software Library) from Functional MRI of the Brain (FMRIB)
fsoFuzzy Set Ordination
fSRMSocial Relations Analyses with Roles ("Family SRM")
FTICRMSPrograms for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
ftnonparFeatures and Strings for Nonparametric Regression
fTradingTechnical Trading Analysis
ftsR interface to tslib (a time series library in c++)
ftsaFunctional Time Series Analysis
ftsspecSpectral Density Estimation and Comparison for Functional Time Series
fueleconomyEPA fuel economy data
fugeRFUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic
fullfactFull Factorial Breeding Analysis
fulltextFull Text of 'Scholarly' Articles Across Many Data Sources
funUse R for Fun
FunChisqChi-Square and Exact Tests for Non-Parametric Functional Dependencies
FunClusterFunctional Profiling of Microarray Expression Data
FunclusteringA package for functional data clustering
FuncMapHive Plots of R Package Function Calls
functionalCurry, Compose, and other higher-order functions
FunctionalNetworksAn algorithm for gene and gene set network inference
functoolsFunctional Programming in R
funcyFunctional Clustering Algorithms
funDataAn S4 Class for Functional Data
funFEMClustering in the Discriminative Functional Subspace
fungibleFungible Coefficients and Monte Carlo Functions
funHDDCModel-based clustering in group-specific functional subspaces
fUnitRootsTrends and Unit Roots
funModelingLearning Data Cleaning, Visual Analysis and Model Performance
funrSimple Utility Providing Terminal Access to all R Functions
funrarFunctional Rarity Indices Computation
funregfunreg (Functional Regression for Irregularly Timed Data)
FUNTAFunctional Tangential Angle Pseudo-Depth
funtimesFunctions for Time Series Analysis
FusedPCACommunity Detection via Fused Principal Component Analysis
futile.anyA Tiny Utility Providing Polymorphic Operations
futile.loggerA Logging Utility for R
futile.matrixRandom Matrix Generation and Manipulation
futile.optionsFutile options management
futile.paradigmA framework for working in a functional programming paradigm in R
futureA Future API for R
future.BatchJobsA Future for BatchJobs
futureheatwavesFind, Characterize, and Explore Heat Waves in Climate Projections
fuzzrFuzz-Test R Functions
FuzzyAHP(Fuzzy) AHP Calculation
fuzzyFDRExact calculation of fuzzy decision rules for multiple testing
fuzzyforestFuzzy Forests
fuzzyjoinJoin Tables Together on Inexact Matching
FuzzyLPFuzzy Linear Programming
FuzzyNumbersTools to Deal with Fuzzy Numbers
fuzzyRankTestsFuzzy Rank Tests and Confidence Intervals
FuzzyStatProbFuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain
FuzzyToolkitUoNType 1 Fuzzy Logic Toolkit
fwdmsaForward search for Mokken scale analysis
FWDselectSelecting Variables in Regression Models
fwi.fbpFire Weather Index System and Fire Behaviour Prediction System Calculations
fwsimFisher-Wright Population Simulation
fxregimeExchange Rate Regime Analysis
G1DBNA package performing Dynamic Bayesian Network inference
G2SdGrain-Size Statistics and Description of Sediment
GAGenetic Algorithms
GA4StratificationA genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
GAabbreviateAbbreviating Items Measures using Genetic Algorithms
GABiFramework for Generalized Subspace Pattern Mining
GADGAD: Analysis of variance from general principles
GaDiFPTFirst Passage Time Simulation for Gaussian Diffusion Processes
gainsGains Table Package
GAIPEGraphical Extension with Accuracy in Parameter Estimation (GAIPE)
galtsGenetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
gamGeneralized Additive Models
gamairData for "GAMs: An Introduction with R"
gambinFit the GamBin Model to Species Abundance Distributions
GAMBoostGeneralized linear and additive models by likelihood based boosting
gamboostLSSBoosting Methods for 'GAMLSS'
gamboostMSMEstimating multistate models using gamboost()
gamclassFunctions and Data for a Course on Modern Regression and Classification
GAMensApplies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification
gamesStatistical Estimation of Game-Theoretic Models
GameTheoryCooperative Game Theory
GameTheoryAllocationTools for Calculating Allocations in Game Theory
gamlrGamma Lasso Regression
gamlssGeneralised Additive Models for Location Scale and Shape
gamlss.addExtra Additive Terms for GAMLSS Models
gamlss.censFitting an Interval Response Variable Using ‘’ Distributions
gamlss.dataGAMLSS Data
gamlss.demoDemos for GAMLSS
gamlss.distDistributions to be Used for GAMLSS Modelling
gamlss.mxFitting Mixture Distributions with GAMLSS
gamlss.nlFitting non linear parametric GAMLSS models
gamlss.spatialSpatial Terms in GAMLSS Models
gamlss.trGenerating and Fitting Truncated ‘’ Distributions
gamlss.utilGAMLSS Utilities
gamm4Generalized additive mixed models using mgcv and lme4
Gammaregclassic gamma regression: joint modeling of mean and shape parameters
gammSliceGeneralized additive mixed model analysis via slice sampling
gamselFit Regularization Path for Generalized Additive Models
GANPAGene Association Network-based Pathway Analysis
GANPAdataThe GANPA Datasets Package
gaoptimGenetic Algorithm optimization for real-based and permutation-based problems
gapGenetic Analysis Package
gapfillFill Missing Values in Satellite Data
gapmapFunctions for Drawing Gapped Cluster Heatmap with ggplot2
gapminderData from Gapminder
GARAuthorize and Request Google Analytics Data
gaselectGenetic Algorithm (GA) for Variable Selection from High-Dimensional Data
gastonGenetic Data Manipulation (Quality Control, GRM and LD Computations, PCA), Linear and Logistic Mixed Models (AIREML Algorithm), Association Testing
gaussDiffDifference measures for multivariate Gaussian probability density functions
gaussfactsThe Greatest Mathematician Since Antiquity
gaussquadCollection of functions for Gaussian quadrature
gazepathParse Eye-Tracking Data into Fixations
gbGeneralize Lambda Distribution and Generalized Bootstrapping
GB2Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation
gbmGeneralized Boosted Regression Models
gbm2sasConvert GBM Object Trees to SAS Code
gbRdUtilities for processing Rd objects and files
gbutilsSimulation of Real and Complex Numbers and Small Programming Utilities
GCAI.biasGuided Correction Approach for Inherited bias (GCAI.bias)
gCatGraph-based two-sample tests for categorical data
gcbdGPU/CPU Benchmarking in Debian-based systems
GCDGlobal Charcoal Database
gcdnetLASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm
gceriskGeneralized Competing Event Model
gclusClustering Graphics
gcmrGaussian Copula Marginal Regression
gconcordConcord method for Graphical Model Selection
gcookbookData for "R Graphics Cookbook"
GCPMGeneralized Credit Portfolio Model
GDAdataDatasets for the Book Graphical Data Analysis with R
gdalUtilsWrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
gdataVarious R Programming Tools for Data Manipulation
g.dataDelayed-Data Packages
GDAtoolsA toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis
GDELTtoolsDownload, slice, and normalize GDELT data
gdimapGeneralized Diffusion Magnetic Resonance Imaging
gdistanceDistances and Routes on Geographical Grids
gdmFunctions for Generalized Dissimilarity Modeling
gdsDescriptive Statistics of Grouped Data
gdtoolsUtilities for Graphical Rendering
gearGeostatistical Analysis in R
geeGeneralized Estimation Equation Solver
GEEaSPUAdaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE)
geeMSolve Generalized Estimating Equations
geepackGeneralized Estimating Equation Package
geesmvModified Variance Estimators for Generalized Estimating Equations
geigenCalculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack
geigerAnalysis of Evolutionary Diversification
gelnetGeneralized Elastic Nets
gemsGeneralized Multistate Simulation Model
gemtcNetwork Meta-Analysis Using Bayesian Methods
gemtc.jarGeMTC Java binary
GenABELgenome-wide SNP association analysis
GenABEL.dataPackage contains data which is used by GenABEL example and test functions
genalgR Based Genetic Algorithm
genasisGlobal ENvironmental ASsessment Information System (GENASIS) computational tools
GenBinomAppsClopper-Pearson Confidence Interval and Generalized Binomial Distribution
GenCATGenetic Class Association Testing
gencveGeneral Cross Validation Engine
gendataGenerate and Modify Synthetic Datasets
genderPredict Gender from Names Using Historical Data
genderizeRGender Prediction Based on First Names
gendistGenerated Probability Distribution Models
GENEAreadPackage For Reading Binary files
GeneCycleIdentification of Periodically Expressed Genes
GeneFPackage for Generalized F-statistics
GeneFeSTBayesian calculation of gene-specific FST from genomic SNP data
GenelandDetection of structure from multilocus genetic data
geneListPieProfiling a gene list into GOslim or KEGG function pie
genemodelGene Model Plotting in R
GeneNetModeling and Inferring Gene Networks
geneNetBPBelief Propagation in Genotype-Phenotype Networks
genepiGenetic Epidemiology Design and Inference
generalCorrGeneralized Correlations and Initial Causal Path
generalhoslemHosmer-Lemeshow Test for Binary and Multinomial Logistic Models
GeneralizedHyperbolicThe Generalized Hyperbolic Distribution
GeneralOaxacaBlinder-Oaxaca Decomposition for Generalized Linear Model
generatorGenerate Data Containing Fake Personally Identifiable Information
GeneRegConstruct time delay gene regulatory network
geneSignatureFinderA Gene-signatures finder tools
geneSLOPEGenome-Wide Association Study with SLOPE
geneticsPopulation Genetics
GeneticSubsetterIdentify Favorable Subsets of Germplasm Collections
GeneticToolsCollection of Genetic Data Analysis Tools
GeNetItSpatial Graph-Theoretic Genetic Gravity Modelling
GenForImpThe Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data
genieA New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm
GenKernFunctions for generating and manipulating binned kernel density estimates
genlassoPath algorithm for generalized lasso problems
GENLIBGenealogical Data Analysis
genMOSSFunctions for the Bayesian Analysis of GWAS Data
genMOSSplusApplication of MOSS algorithm to genome-wide association study (GWAS)
genomeplot'Plot genome wide values for all chromosomes'
genomicperCircular Genomic Permutation using Gwas p-Values of Association
genoPlotRPlot Publication-Grade Gene and Genome Maps
GenOrdSimulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions
genpathmoxGeneralized PATHMOX Algorithm for PLS-PM, LS and LAD Regression
genridgeGeneralized Ridge Trace Plots for Ridge Regression
GenSAR Functions for Generalized Simulated Annealing
gensemblegeneralized ensemble methods
gensphereGeneralized Spherical Distributions
genSurvGenerating Multi-State Survival Data
GenWinSpline Based Window Boundaries for Genomic Analyses
geoDraw and Annotate Maps, Especially Charts of the North Atlantic
geoaxeSplit 'Geospatial' Objects into Pieces
geoBayesAnalysis of Geostatistical Data using Bayes and Empirical Bayes Methods
GeoBoxplotGeographic Box Plot
geocodeHEREWrapper for Nokia's HERE Geocoding API
geoCountAnalysis and Modeling for Geostatistical Count Data
GeoDEA geometrical Approach to Differential expression and gene-set enrichment
geoelectrics3D-Visualization of Geoelectric Resistivity Measurement Profiles
geofdSpatial Prediction for Function Value Data
GeoGenetixQuantification of the effect of geographic versus environmental isolation on genetic differentiation
geohashTools for Geohash Creation and Manipulation
geojsonioConvert Data from and to 'geoJSON' or 'topoJSON'
geojsonlintTools for Validating 'GeoJSON'
geoknifeWeb-Processing of Large Gridded Datasets
GeoLightAnalysis of Light Based Geolocator Data
GEOmapTopographic and Geologic Mapping
geomapdataData for topographic and Geologic Mapping
geometryMesh Generation and Surface Tesselation
geomnetNetwork Visualization in the 'ggplot2' Framework
geomorphGeometric Morphometric Analyses of 2D/3D Landmark Data
geonamesInterface to web service
geoparserInterface to the API for Identifying and Disambiguating Places Mentioned in Text
geophysGeophysics, Continuum Mechanics, Mogi Models, Gravity
geoRAnalysis of Geostatistical Data
geoRglmA Package for Generalised Linear Spatial Models
georobRobust Geostatistical Analysis of Spatial Data
geoscaleGeological Time Scale Plotting
geospacomFacilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps
geosphereSpherical Trigonometry
geosptGeostatistical Analysis and Design of Optimal Spatial Sampling Networks
geosptdbSpatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression
geostatspGeostatistical Modelling with Likelihood and Bayes
geotechGeotechnical Engineering
geotoolsGeo tools
geotopbricksAn R Plug-in for the Distributed Hydrological Model GEOtop
GeoXpInteractive exploratory spatial data analysis
geozooZoo of Geometric Objects
gepafGoogle Encoded Polyline Algorithm Format
GERGMEstimation and Fit Diagnostics for Generalized Exponential Random Graph Models
gescaGeneralized Structured Component Analysis (GSCA)
gesisR Client for GESIS Data Catalogue (DBK)
GESTrGene Expression State Transformation
GetHFDataDownload and Aggregate High Frequency Trading Data from Bovespa
getMetGet Meteorological Data for Hydrologic Models
getoptC-like getopt behavior
GetoptLongParsing Command-Line Arguments and Variable Interpolation
getPassMasked User Input
GetRGetR: Calculate Guttman error trees in R
getsGeneral-to-Specific (GETS) Modelling and Indicator Saturation Methods
GetTDDataGet Data for Brazilian Bonds (Tesouro Direto)
gettingtothebottomLearning Optimization and Machine Learning for Statistics
GEVcdnGEV Conditional Density Estimation Network
GEVStableGarchARMA-GARCH/APARCH Models with GEV and Stable Distributions
GExMapA visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data
gfcanalysisTools for Working with Hansen et al. Global Forest Change Dataset
GFDTests for General Factorial Designs
GGallyExtension to 'ggplot2'
ggaltExtra Coordinate Systems, Geoms and Statistical Transformations for 'ggplot2'
ggbeeswarmCategorical Scatter (Violin Point) Plots
ggcorrplotVisualization of a Correlation Matrix using 'ggplot2'
ggdendroCreate Dendrograms and Tree Diagrams Using 'ggplot2'
ggeGenotype Plus Genotype-by-Environment Biplots
GGEBiplotGUIInteractive GGE Biplots in R
ggenealogyVisualization Tools for Genealogical Data
ggExtraAdd Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
ggfortifyData Visualization Tools for Statistical Analysis Results
GGIRRaw Accelerometer Data Analysis
ggiraphMake 'ggplot2' Graphics Interactive Using 'htmlwidgets'
gglassoGroup Lasso Penalized Learning Using A Unified BMD Algorithm
gglogoGeom for Logo Sequence Plots
ggmFunctions for graphical Markov models
ggmapSpatial Visualization with ggplot2
ggmcmcTools for Analyzing MCMC Simulations from Bayesian Inference
GGMridgeGaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation
GGMselectGaussian Graphs Models Selection
ggnetworkGeometries to Plot Networks with 'ggplot2'
ggparallelVariations of Parallel Coordinate Plots for Categorical Data
ggplot2An Implementation of the Grammar of Graphics
ggplot2moviesMovies Data
ggpmiscMiscellaneous Extensions to 'ggplot2'
ggpubr'ggplot2' Based Publication Ready Plots
ggRandomForestsVisually Exploring Random Forests
ggraptRAllows Interactive Visualization of Data Through a Web Browser GUI
ggrepelRepulsive Text and Label Geoms for 'ggplot2'
ggROCpackage for roc curve plot with ggplot2
ggsciScientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
ggseas'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
ggsnNorth Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap'
ggspectraExtensions to 'ggplot2' for Radiation Spectra
ggswissmapsOffers Various Swiss Maps as ggplot2 Objects
ggternAn Extension to 'ggplot2', for the Creation of Ternary Diagrams
ggThemeAssistAdd-in to Customize 'ggplot2' Themes
ggthemesExtra Themes, Scales and Geoms for 'ggplot2'
ggvisInteractive Grammar of Graphics
GHapGenome-Wide Haplotyping
ghitLightweight GitHub Package Installer
GHQpGauss Hermite Quadrature with pruning
ghypA package on the generalized hyperbolic distribution and its special cases
GiANTGene Set Uncertainty in Enrichment Analysis
GibbsACOVGibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
gibbs.metNaive Gibbs Sampling with Metropolis Steps
GIGrvgRandom Variate Generator for the GIG Distribution
GillespieSSAGillespie's Stochastic Simulation Algorithm (SSA)
gimmeGroup Iterative Multiple Model Estimation
gimmsDownload and Process GIMMS NDVI3g Data
GiNAHigh Throughput Phenotyping
GiniWegNegComputing the Gini-Based Coefficients for Weighted and Negative Attributes
gIPFrmGeneralized Iterative Proportional Fitting for Relational Models
GiRaFGibbs Random Fields Analysis
giRaphThe giRaph package for graph representation in R
GISToolsSome further GIS capabilities for R
gistrWork with 'GitHub' 'Gists'
git2rProvides Access to Git Repositories
githubinstallAn Easy Way to Install R Packages on GitHub
gitlabrAccess to the Gitlab API
gitterQuantification of Pinned Microbial Cultures
givitiRThe GiViTI Calibration Test and Belt
GizaConstructing panels of population pyramid plots based on lattice
gjamGeneralized Joint Attribute Modeling
GK2011Gaines and Kuklinski (2011) Estimators for Hybrid Experiments
gkmSVMGapped-Kmer Support Vector Machine
glamlassoLasso Penalization in Large Scale Generalized Linear Array Models
glarmaGeneralized Linear Autoregressive Moving Average Models
glassoGraphical lasso- estimation of Gaussian graphical models
glbaGeneral Linear Ballistic Accumulator Models
glcmCalculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs)
gldEstimation and Use of the Generalised (Tukey) Lambda Distribution
GLDEXFitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
gldistAn Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution
GLDregFit GLD Regression Model and GLD Quantile Regression Model to Empirical Data
glinternetLearning Interactions via Hierarchical Group-Lasso Regularization
gllmGeneralised log-linear model
glm2Fitting Generalized Linear Models
glmbbAll Hierarchical or Graphical Models for Generalized Linear Model
glmBfpBayesian Fractional Polynomials for GLMs
glmcFitting Generalized Linear Models Subject to Constraints
glm.ddRDistributed 'glm' for Big Data using 'ddR' API
glmdmR Code for Simulation of GLMDM
glmgraphGraph-Constrained Regularization for Sparse Generalized Linear Models
glmlepFit GLM with LEP-based penalized maximum likelihood
glmmGeneralized Linear Mixed Models via Monte Carlo Likelihood Approximation
glmmBUGSGeneralised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS
glmmGSGauss-Seidel Generalized Linear Mixed Model solver
glmmLassoVariable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation
glmmMLGeneralized linear models with clustering
GLMMRRGeneralized Linear Mixed Model (GLMM) for Binary Randomized Response Data
glmmsrFit a Generalized Linear Mixed Model
glmnetLasso and Elastic-Net Regularized Generalized Linear Models
glmnetcrFit a penalized constrained continuation ratio model for predicting an ordinal response
glmpathL1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
glmpathcrFit a penalized continuation ratio model for predicting an ordinal response
glmultiModel selection and multimodel inference made easy
glmvsdVariable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models
glmxGeneralized Linear Models Extended
globalboosttestTesting the additional predictive value of high-dimensional data
GlobalDevianceGlobal Deviance Permutation Tests
GlobalFitBi-Level Optimization of Metabolic Network Models
globalGSAGlobal Gene-Set Analysis for Association Studies
GlobalOptionsGenerate Functions to Get or Set Global Options
globalOptTestsObjective functions for benchmarking the performance of global optimization algorithms
globalsIdentify Global Objects in R Expressions
globePlot 2D and 3D Views of the Earth, Including Major Coastline
glogisFitting and Testing Generalized Logistic Distributions
glpkAPIR Interface to C API of GLPK
glrtGeneralized Logrank Tests for Interval-censored Failure Time Data
GLSMEGeneralized Least Squares with Measurement Error
glycanrTools for Analysing N-Glycan Data
gmailrAccess the Gmail RESTful API
gmapsdistanceDistance and Travel Time Between Two Points from Google Maps
gmatrixGPU Computing in R
GMCMFast Estimation of Gaussian Mixture Copula Models
gMCPGraph Based Multiple Comparison Procedures
GMDGeneralized Minimum Distance of distributions
gmDatabaseAccessing a Geometallurgical Database with R
GMDHShort Term Forecasting via GMDH-Type Neural Network Algorithms
GmedianGeometric Median, k-Median Clustering and Robust Median PCA
gmetaMeta-Analysis via a Unified Framework of Confidence Distribution
GmiscDescriptive Statistics, Transition Plots, and More
gmmGeneralized Method of Moments and Generalized Empirical Likelihood
GMMBoostLikelihood-based Boosting for Generalized mixed models
gmnlMultinomial Logit Models with Random Parameters
gmodelsVarious R Programming Tools for Model Fitting
gmpMultiple Precision Arithmetic
gmtInterface between GMT Map-Making Software and R
gmum.rGMUM Machine Learning Group Package
gmwmGeneralized Method of Wavelet Moments
gMWTGeneralized Mann-Whitney Type Tests
GNEComputation of Generalized Nash Equilibria
gnmGeneralized Nonlinear Models
gnmfGeneralized Non-negative Matrix Factorization Based on Renyi Divergence
gnumericRead Data from Files Readable by Gnumeric
goalprogWeighted and lexicographical goal programming and optimization
goevegFunctions for Community Data and Ordinations
gofModel-diagnostics based on cumulative residuals
gofCopulaGoodness-of-Fit Tests for Copulae
GoFKernelTesting Goodness-of-Fit with the Kernel Density Estimator
GofKmtKhmaladze Martingale Transformation Goodness-of-Fit Test
goftTests of Fit for some Probability Distributions
goftestClassical Goodness-of-Fit Tests for Univariate Distributions
GOGANPAGO-Functional-Network-based Gene-Set-Analysis
gogarchGeneralized Orthogonal GARCH (GO-GARCH) models
GoodmanKruskalAssociation Analysis for Categorical Variables
googleAnalyticsRGoogle Analytics API into R
googleAuthREasy Authentication with Google OAuth2 API
googleformrCollect Data Programmatically by POST Methods to Google Forms
googlePublicDataWorking with Google Public Data Explorer DSPL Metadata Files
googlesheetsManage Google Spreadsheets from R
googleVisR Interface to Google Charts
googlewayRetrieves Data from Google Maps APIs
GOplotVisualization of Functional Analysis Data
GORCureFit Generalized Odds Rate Mixture Cure Model with Interval Censored Data
goricGeneralized Order-Restricted Information Criterion
govStatJPNfunctions to get public survey data in Japan
gpairsgpairs: The Generalized Pairs Plot
GParetoGaussian Processes for Pareto Front Estimation and Optimization
GPArotationGPA Factor Rotation
GPCGeneralized Polynomial Chaos
gPCABatch Effect Detection via Guided Principal Components Analysis
gpclibGeneral Polygon Clipping Library for R
GPCSIVGPCSIV, Generalized Principal Component of Symbolic Interval variables
gpDDEGeneral Profiling Method for Delay Differential Equation
gPdtestBootstrap goodness-of-fit test for the generalized Pareto distribution
GPFDAApply Gaussian Process in Functional data analysis
GPfitGaussian Processes Modeling
gpk100 Data Sets for Statistics Education
gplmGeneralized partial linear models (GPLM)
gplotsVarious R Programming Tools for Plotting Data
GPLTRGeneralized Partially Linear Tree-Based Regression Model
gpmapAnalysing and plotting genotype-phenotype maps
gprA Minimalistic package to apply Gaussian Process in R
gProfileRInterface to the 'g:Profiler' Toolkit
GPseqgpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
gptkGaussian Processes Tool-Kit
gpuRGPU Functions for R Objects
gputoolsA Few GPU Enabled Functions
GPvamMaximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling
gquadG Quadruplex Motif Prediction Tool
GraceGraph-Constrained Estimation and Hypothesis Tests
gradeBinary Grading functions for R
GRaFSpecies distribution modelling using latent Gaussian random fields
gRainGraphical Independence Networks
gramEvolGrammatical Evolution for R
GrammRGraphical Representation and Modeling of Metagenomic Reads
GRANBaseCreating Continuously Integrated Package Repositories from Manifests
granovaGraphical Analysis of Variance
granovaGGGraphical Analysis of Variance Using ggplot2
gRapfaAcyclic Probabilistic Finite Automata
gRapHDEfficient selection of undirected graphical models for high-dimensional datasets
GrapheRA Multi-Platform GUI for Drawing Customizable Graphs in R
graphicalVARGraphical VAR for Experience Sampling Data
graphicsQCQuality Control for Graphics in R
graphscanCluster Detection with Hypothesis Free Scan Statistic
graphTweetsVisualise Twitter Interactions
GrassmannOptimGrassmann Manifold Optimization
graticuleMeridional and Parallel Lines for Maps
gRbaseA Package for Graphical Modelling in R
gRcInference in Graphical Gaussian Models with Edge and Vertex Symmetries
GregRegression Helper Functions
greportGraphical Reporting for Clinical Trials
grexGene ID Mapping for Genotype-Tissue Expression (GTEx) Data
greyzoneSurvFit a Grey-Zone Model with Survival Data
Grid2PolygonsConvert Spatial Grids to Polygons
gridBaseIntegration of base and grid graphics
gridDebugDebugging 'grid' Graphics
gridExtraMiscellaneous Functions for "Grid" Graphics
gridGraphicsRedraw Base Graphics Using 'grid' Graphics
gridGraphvizDrawing Graphs with 'grid'
gridSVGExport 'grid' Graphics as SVG
GriegSmithUses Grieg-Smith method on 2 dimentional spatial data
gRimGraphical Interaction Models
grImportImporting Vector Graphics
grnnGeneral regression neural network
grocGeneralized Regression on Orthogonal Components
grofitThe package was developed to fit fit many growth curves obtained under different conditions
gromovlabGromov-Hausdorff Type Distances for Labeled Metric Spaces
groupedRegression Analysis of Grouped and Coarse Data
groupRemMapRegularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty
GroupSeqA GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs
GroupTestMultiple Testing Procedure for Grouped Hypotheses
growcurvesBayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects
growfunctionsBayesian Non-Parametric Dependent Models for Time-Indexed Functional Data
growthcurverSimple Metrics to Summarize Growth Curves
growthmodelsNonlinear Growth Models
growthrateBayesian reconstruction of growth velocity
growthratesEstimate Growth Rates from Experimental Data
grplassoFitting user specified models with Group Lasso penalty
grppenaltyConcave 1-norm and 2-norm group penalty in linear and logistic regression
grpregRegularization Paths for Regression Models with Grouped Covariates
grpregOverlapPenalized Regression Models with Overlapping Grouped Covariates
grpSLOPEGroup Sorted L1 Penalized Estimation
grpssGroup Screening and Selection
grrAlternative Implementations of Base R Functions
grtGeneral Recognition Theory
GRToTools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes
GSAGene set analysis
GSAgmGene Set Analysis using the Gamma Method
gsalibUtility Functions For GATK
gsarimaTwo functions for Generalized SARIMA time series simulation
gsbDesignGroup Sequential Bayes Design
gsDesignGroup Sequential Design
GSERobust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data
gsEasyGene Set Enrichment Analysis in R
gSegGraph-Based Change-Point Detection (g-Segmentation)
gSEMSemi-Supervised Generalized Structural Equation Modeling
gsetGroup Sequential Design in Equivalence Studies
gsgCalculation of selection coefficients
gsheetDownload Google Sheets Using Just the URL
GSIFGlobal Soil Information Facilities
gslwrapper for the Gnu Scientific Library
GSMGamma Shape Mixture
gsmoothrSmoothing tools
GSODRDownload, Clean and Generate New Variables from GSOD Data
gsrcGenome Structure Rearrangement Calling in Genomes with High Synteny
gssGeneral Smoothing Splines
gsscopuCopula Density and 2-D Hazard Estimation using Smoothing Splines
GSSEGenotype-Specific Survival Estimation
gstatSpatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
gsubfnUtilities for strings and function arguments
gswGibbs Sea Water Functions
GsymPointEstimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests
gtableArrange 'Grobs' in Tables
gtcorrCalculate efficiencies of group testing algorithms with correlated responses
gteGeneralized Turnbull's Estimator
gtoolsVarious R Programming Tools
gtopGame-Theoretically OPtimal (GTOP) Reconciliation Method
gtrendsRR Functions to Perform and Display Google Trends Queries
gtxGenetics ToolboX
GuardianRThe Guardian API Wrapper
GuerryMaps, data and methods related to Guerry (1833) "Moral Statistics of France"
guessAdjust Estimates of Learning for Guessing
GUIDEGUI for DErivatives in R
GUILDSImplementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure
GUIProfilerGraphical User Interface for Rprof()
gumbelThe Gumbel-Hougaard Copula
GUniFracGeneralized UniFrac distances
gunsalesStatistical Analysis of Monthly Background Checks of Gun Purchases
gutenbergrDownload and Process Public Domain Works from Project Gutenberg
GUTSFast Calculation of the Likelihood of a Stochastic Survival Model
gvcGlobal Value Chains Tools
gvcm.catRegularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs
gvlmaGlobal Validation of Linear Models Assumptions
GWAFGenome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data
GWASExactHWExact Hardy-Weinburg testing for Genome Wide Association Studies
gwdegreeA Shiny App to Aid Interpretation of Geometrically-Weighted Degree Estimates in Exponential Random Graph Models
gwerAMControlling the genome-wide type I error rate in association mapping experiments
GWGCalculation of probabilities for inadequate and excessive gestational weight gain
gWidgetsgWidgets API for building toolkit-independent, interactive GUIs
gWidgets2Rewrite of gWidgets API for Simplified GUI Construction
gWidgets2RGtk2Implementation of gWidgets2 for the RGtk2 Package
gWidgets2tcltkToolkit Implementation of gWidgets2 for tcltk
gWidgetsRGtk2Toolkit implementation of gWidgets for RGtk2
gWidgetstcltkToolkit implementation of gWidgets for tcltk package
GWLelastGeographically Weighted Logistic Elastic Net Regression
GWmodelGeographically-Weighted Models
GWRMGeneralized Waring Regression Model for Count Data
gwrrFits geographically weighted regression models with diagnostic tools
GWsignifEstimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests
GxMMaximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models
gyriqKinship-Adjusted Survival SNP-Set Analysis
h2oR Interface for H2O
h5Interface to the 'HDF5' Library
haarfiszSoftware to perform Haar Fisz transforms
HACEstimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC)
HadoopStreamingUtilities for using R scripts in Hadoop streaming
hailRead HYDRA Rainfall Data
hamletHierarchical Optimal Matching and Machine Learning Toolbox
HandTill2001Multiple Class Area under ROC Curve
HankelUnivariate non-parametric two-sample test based on empirical Hankel transforms
hapassocInference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
HapEstXXRMulti-Locus Stepwise Regression
HaplinAnalyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes
haplo.ccsEstimate Haplotype Relative Risks in Case-Control Data
HaploSimFunctions to simulate haplotypes
haplo.statsStatistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
haplotyperTool for Clustering Genotypes in Haplotypes
haplotypesHaplotype Inference and Statistical Analysis of Genetic Variation
HAP.RORRecursive Organizer (ROR)
HardyWeinbergStatistical Tests and Graphics for Hardy-Weinberg Equilibrium
HarmonicRegressionHarmonic Regression to One or more Time Series
harvestrA Parallel Simulation Framework
Harvest.TreeHarvest the Classification Tree
hashFull feature implementation of hash/associated arrays/dictionaries
hashFunctionA collection of non-cryptographic hash functions
hashidsGenerate Short Unique YouTube-Like IDs (Hashes) from Integers
hashmapThe Faster Hash Map
hashrHash R Objects to Integers Fast
hasseDiagramDrawing Hasse diagram
havenImport 'SPSS', 'Stata' and 'SAS' Files
hawkesHawkes process simulation and calibration toolkit
hazusDamage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters
hBayesDMHierarchical Bayesian Modeling of Decision-Making Tasks
HBglmHierarchical Bayesian Regression for GLMs
hbimHill/Bliss Independence Model for Combination Vaccines
hbmHierarchical Block Matrix Analysis
hbmemHierarchical Bayesian Analysis of Recognition Memory
hbsaeHierarchical Bayesian Small Area Estimation
HBSTMHierarchical Bayesian Space-Time models for Gaussian space-time data
hccHidden correlation check
hcciInterval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap)
hcpChange Point Estimation for Regression with Heteroscedastic Data
hdaHeteroscedastic Discriminant Analysis
HDclassifHigh Dimensional Supervised Classification and Clustering
HDDesignSample Size Calculation for High Dimensional Classification Study
hddplotUse known groups in high-dimensional data to derive scores for plots
hddtoolsHydrological Data Discovery Tools
hdecoHierarchical DECOmposition of Entropy for Categorical Map Comparisons
HDGLMTests for High Dimensional Generalized Linear Models
hdiHigh-Dimensional Inference
HDIntervalHighest (Posterior) Density Intervals
hdlmFitting High Dimensional Linear Models
hdmHigh-Dimensional Metrics
HDMDStatistical Analysis Tools for High Dimension Molecular Data (HDMD)
hdnomNomograms for High-Dimensional Cox Models
HDoutliersLeland Wilkinson's Algorithm for Detecting Multidimensional Outliers
HDPenRegHigh-Dimensional Penalized Regression
hdrInterface to the UNDR Human Development Report API
hdrcdeHighest density regions and conditional density estimation
HDtweedieThe Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm
HEATHealth Effects of Air Pollution and Temperature (HEAT)
heatexHeat exchange calculations during physical activity
heatmap3An Improved Heatmap Package
heatmapFitFit Statistic for Binary Dependent Variable Models
heatmaplyInteractive Heat Maps Using 'plotly'
heatmap.plusHeatmap with more sensible behavior
heavyRobust Estimation Using Heavy-Tailed Distributions
heemodModels for Health Economic Evaluation
hellnoProviding 'stringsAsFactors=FALSE' Variants of 'data.frame()' and ''
helloJavaWorldHello Java World
HelpersMGTools for Earth Meteorological Analysis
helsinkiR Tools for Helsinki Open Data
heplotsVisualizing Hypothesis Tests in Multivariate Linear Models
hergmHierarchical Exponential-Family Random Graph Models
heritabilityMarker-Based Estimation of Heritability Using Individual Plant or Plot Data
hermiteGeneralized Hermite Distribution
hetmetaHeterogeneity Measures in Meta-Analysis
hettHeteroscedastic t-regression
het.testWhite's Test for Heteroskedasticity
heuristicaHeuristics Including Take the Best and Unit-Weight Linear
hexbinHexagonal Binning Routines
hextriHexbin Plots with Triangles
hexViewViewing Binary Files
hflightsFlights that departed Houston in 2011
hgamHigh-dimensional Additive Modelling
hglassoLearning graphical models with hubs
hglmHierarchical Generalized Linear Models
hglm.dataData for The hglm Package
hgmHolonomic Gradient Method and Gradient Descent
HGNChelperHandy Functions for Working With HGNC Gene Symbols and Affymetrix Probeset Identifiers
HHStatistical Analysis and Data Display: Heiberger and Holland
HHGHeller-Heller-Gorfine Tests of Independence and Equality of Distributions
hhtThe Hilbert-Huang Transform: Tools and Methods
HISimulation from distributions supported by nested hyperplanes
HIBPwnedBindings for the Data Breach API
HiCfeatMultiple Logistic Regression for 3D Chromatin Domain Border Analysis
HiClimRHierarchical Climate Regionalization
HiCsegDetection of domains in HiC data
hiddenfThe All-Configurations, Maximum-Interaction F-Test for Hidden Additivity
HiddenMarkovHidden Markov Models
HiDimDAHigh Dimensional Discriminant Analysis
HiDimMaxStableInference on High Dimensional Max-Stable Distributions
hierarchicalDSFunctions For Performing Hierarchical Analysis of Distance Sampling Data
hierarchicalSetsSet Data Visualization Using Hierarchies
hierbandConvex Banding of the Covariance Matrix
hierDiversityHierarchical Multiplicative Partitioning of Complex Phenotypes
hierformRAnalysis of Dynamics Hierarchy Formation
hierfstatEstimation and Tests of Hierarchical F-Statistics
hierNetA Lasso for Hierarchical Interactions
HierOA graphical user interface for calculating power and sample size for hierarchical data
hier.partHierarchical Partitioning
hiertestConvex Hierarchical Testing of Interactions
HIestHybrid index estimation
highcharterA Wrapper for the 'Highcharts' Library
highD2popTwo-Sample Tests for Equality of Means in High Dimension
HighDimOutOutlier Detection Algorithms for High-Dimensional Data
highfrequencyTools For Highfrequency Data Analysis
highlightSyntax Highlighter
highmeanTwo-Sample Tests for High-Dimensional Mean Vectors
highrSyntax Highlighting for R Source Code
highriskzoneDetermining and Evaluating High-Risk Zones
highSCREENHigh Throughput Screening for Plate Based Essays
highTtestSimultaneous Critical Values for t-Tests in Very High Dimensions
hillmakeRPerform occupancy analysis
HiLMMEstimation of Heritability in Linear Mixed Models
hindexcalculatorH-Index Calculator using Data from a Web of Science (WoS) Citation Report
hintTools for hypothesis testing based on Hypergeometric Intersection distributions
HiPLARMHigh Performance Linear Algebra in R
hiPODhierarchical Pooled Optimal Design
hisemiHierarchical Semiparametric Regression of Test Statistics
hisseHidden State Speciation and Extinction
HistDataData Sets from the History of Statistics and Data Visualization
HistDAWassHistogram-Valued Data Analysis
histmdlA Most Informative Histogram-Like Model
histogramConstruction of regular and irregular histograms with different options for automatic choice of bins
HistogramToolsUtility Functions for R Histograms
historydataData Sets for Historians
hitHierarchical Inference Testing
hitandrun"Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes
hiveHadoop InteractiVE
HiveR2D and 3D Hive Plots for R
HIV.LifeTablesHIV calibrated model life tables for countries with generalized HIV epidemics
HK80Conversion Tools for HK80 Geographical Coordinate System
hkevpSpatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012)
hkex.apiAPI to Retrieve Data from Hong Kong Stock Exchange
HKprocessHurst-Kolmogorov Process
HLMdiagDiagnostic Tools for Hierarchical (Multilevel) Linear Models
HLSMHierarchical Latent Space Network Model (HLSM)
HMDHFDplusRead HMD and HFD Data from the Web
hmeasureThe H-measure and other scalar classification performance metrics
HmiscHarrell Miscellaneous
HMMHMM - Hidden Markov Models
HMMContHidden Markov Model for Continuous Observations Processes
hmm.discnpHidden Markov Models with Discrete Non-Parametric Observation Distributions
hmmmhierarchical multinomial marginal models
HMMpaAnalysing accelerometer data using hidden Markov models
HMPHypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
HMPTreesStatistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data
HMRFlux Estimation with Static Chamber Data
hmsPretty Time of Day
HMVDGroup Association Test using a Hidden Markov Model
hnpHalf-Normal Plots with Simulation Envelopes
hoaHigher Order Likelihood Inference
hoardeRInformation Retrieval for Genetic Datasets
holdemTexas Holdem simulator
HolidaysHoliday and Half-Day Data, for Use with the 'TimeWarp' Package
homalsGifi Methods for Optimal Scaling
homeRUseful Functions for Building Physics
HomericDoughnut Plots
homomorpheRHomomorphic Computations in R
HomoPolymerTheoretical Model to Simulate Radical Polymerization
homtestHomogeneity tests for Regional Frequency Analysis
hopbyhopTransmissions and Receptions in a Hop by Hop Network
hornpaHorn's (1965) Test to Determine the Number of Components/Factors
hot.deckMultiple Hot-Deck Imputation
HotDeckImputationHot Deck Imputation Methods for Missing Data
HotellingHotelling's T-squared test and variants
hotspotSoftware Hotspot Analysis
hotspotsHot spots
housingDataU.S. Housing Data from 2008 to 2016
howmanyA lower bound for the number of correct rejections
HPbayesHeligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
hpcwldHigh Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
hpoPlotFunctions for Plotting HPO Terms
hqmiscMiscellaneous convenience functions and dataset
hqregRegularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression
HRMHigh-Dimensional Repeated Measures
hrrHorizontal rule for the R language
HSARHierarchical Spatial Autoregressive Model (HSAR)
HSAURA Handbook of Statistical Analyses Using R (1st Edition)
HSAUR2A Handbook of Statistical Analyses Using R (2nd Edition)
HSAUR3A Handbook of Statistical Analyses Using R (3rd Edition)
hsdarManage, Analyse and Simulate Hyperspectral Data
hSDMhierarchical Bayesian species distribution models
hsicCCACanonical Correlation Analysis based on Kernel Independence Measures
hsmA Path-Based BCD for Proximal Function of Latent Group Lasso
hsmmHidden Semi Markov Models
hsphasePhasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
HSROCMeta-Analysis of Diagnostic Test Accuracy when Reference Test is Imperfect
HSSVDBiclustering with Heterogeneous Variance
htmltabAssemble Data Frames from HTML Tables
htmlTableAdvanced Tables for Markdown/HTML
htmltoolsTools for HTML
HTMLUtilsFacilitates Automated HTML Report Creation
htmlwidgetsHTML Widgets for R
htsHierarchical and Grouped Time Series
HTSClusterClustering High-Throughput Transcriptome Sequencing (HTS) Data
httkHigh-Throughput Toxicokinetics
httpcacheQuery Cache for HTTP Clients
httpcode'HTTP' Status Code Helper
httping'Ping' 'URLs' to Time 'Requests'
httpRequestBasic HTTP Request
httpuvHTTP and WebSocket Server Library
httrTools for Working with URLs and HTTP
hugeHigh-Dimensional Undirected Graph Estimation
HUMcompute HUM value and visualize ROC curves
humanFormatHuman-friendly formatting functions
humaniformatA Parser for Human Names
humarraySimplify Analysis and Annotation of Human Microarray Datasets
humidityAn R Package for Calculating Water Vapor Measures from Temperature and Relative Humidity
hunspellMorphological Analysis and Spell Checker for R
hwdeModels and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci
HWEBayesBayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing
HWEintrinsicObjective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
HW.pvalTesting Hardy-Weinberg Equilibrium for Multiallelic Genes
hwriterHTML Writer - Outputs R objects in HTML format
hwriterPlushwriterPlus: Extending the hwriter Package
hwwntestTests of White Noise using Wavelets
HWxtestExact Tests for Hardy-Weinberg Proportions
hybridEnsembleBuild, Deploy and Evaluate Hybrid Ensembles
hybridHclustHybrid Hierarchical Clustering
HybridMCImplementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
hybridModelsStochastic Hybrid Models in Dynamic Networks
HydeNetHybrid Bayesian Networks Using R and JAGS
hydroAppsTools and models for hydrological applications
hydrogeoGroundwater Data Presentation and Interpretation
hydroGOFGoodness-of-fit functions for comparison of simulated and observed hydrological time series
HydroMeR codes for estimating water retention and infiltration model parameters using experimental data
hydroPSOParticle Swarm Optimisation, with focus on Environmental Models
hydrostatsHydrologic Indices for Daily Time Series Data
hydroTSMTime series management, analysis and interpolation for hydrological modelling
hyfoHydrology and Climate Forecasting
HyperbolicDistThe hyperbolic distribution
hyperdirichletA generalization of the Dirichlet distribution
hypergeaHypergeometric Tests
hypergeoThe Gauss Hypergeometric Function
hyperSpecWork with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
hypervolumeHigh-Dimensional Kernel Density Estimation and Geometry Operations
hyphenatrTools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library
HyPhyMacroevolutionary phylogentic analysis of species trees and gene trees
hypothesestestConfidence Intervals and Tests of Statistical Hypotheses
hypothesisrWrapper for the '' Web Annotation Service
hysteresisTools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
hzarHybrid Zone Analysis using R
IalsaSynthesisSynthesizing Information Across Collaborating Research
IASDModel Selection for Index of Asymmetry Distribution
IATCleaning and Visualizing Implicit Association Test (IAT) Data
IATscoresImplicit Association Test Scores Using Robust Statistics
iBATCGHIntegrative Bayesian Analysis of Transcriptomic and CGH Data
IBDhaploRtoolsFunctions for the Analysis of IBD Haplo Output
IBDLabelsConvert Between Different IBD-State Labelling Schemes
ibdregRegression Methods for IBD Linkage With Covariates
IBDsimSimulation of Chromosomal Regions Shared by Family Members
ibeemdIrregular-lattice based ensemble empirical mode decomposition
ibeliefBelief Function Implementation
IBHMApproximation using the IBHM method
ibmIndividual Based Models in R
ibmdbRIBM in-Database Analytics for R
IbootIboot: iterated bootstrap tests and confidence sets
ibrIterative Bias Reduction
IBrokersR API to Interactive Brokers Trader Workstation
iBUGSAn Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
iC10A Copy Number and Expression-Based Classifier for Breast Tumours
iC10TrainingDataTraining datasets for iC10 package
IC2Inequality and Concentration Indices and Curves
ic50Standardized high-throughput evaluation of cell-based compound screens
icaIndependent Component Analysis
ICAFFImperialist Competitive Algorithm
icamixEstimation of ICA Mixture Models
icaOcularCorrectionIndependent Components Analysis (ICA) based artifact correction
icapcaMixed ICA/PCA
icarusCalibrates and Reweights Units in Samples
ICBayesBayesian Semiparametric Models for Interval-Censored Data
ICCFacilitating Estimation of the Intraclass Correlation Coefficient
iccbetaMultilevel model intraclass correlation for slope heterogeneity
ICC.Sample.SizeCalculation of Sample Size and Power for ICC
icdTools for Working with ICD-9 and ICD-10 Codes, and Finding Comorbidities
icd9Tools for Working with ICD-9 Codes, and Finding Comorbidities
icdGLMEM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models
ICEIterated Conditional Expectation
ICEboxIndividual Conditional Expectation Plot Toolbox
ICEinferIncremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
icenRegRegression Models for Interval Censored Data
icensmisStudy Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes
icesAdviceFunctions Related to ICES Advice
ICGEEstimation of number of clusters and identification of atypical units
ICGORFit Generalized Odds Rate Hazards Model with Interval Censored Data
ic.inferInequality constrained inference in linear normal situations
iClickA Button-Based GUI for Financial and Economic Data Analysis
iClusterIntegrative clustering of multiple genomic data types
icpsrdataReproducible Data Retrieval from the ICPSR Archive
icRSFA Modified Random Survival Forest Algorithm
ICSTools for Exploring Multivariate Data via ICS/ICA
ICSNPTools for Multivariate Nonparametrics
ICsurvA package for semiparametric regression analysis of interval-censored data
icswInverse Compliance Score Weighting
idbgR debugger
idbrR Interface to the US Census Bureau International Data Base API
idemInference in Randomized Controlled Trials with Death and Missingness
idendr0Interactive Dendrograms
identityJacquard Condensed Coefficients of Identity
idmIncremental Decomposition Methods
IDPmiscUtilities of Institute of Data Analyses and Process Design (
IDPSurvivalImprecise Dirichlet Process for Survival Analysis
idrIrreproducible discovery rate
IDSpatialStatsEstimate Global Clustering in Infectious Disease
IDTurtleIdentify Turtles by their Plastral Biometries
iDynoRR Analysis package for iDynoMiCS Simulation Results
ie2miscIrucka Embry's Miscellaneous USGS Functions
ie2miscdataIrucka Embry's Miscellaneous USGS Data Collection
ieeeroundFunctions to set and get the IEEE rounding mode
iemiscIrucka Embry's Miscellaneous Functions
iemiscdataIrucka Embry's Miscellaneous Data Collection
ifaIndependent Factor Analysis
iFadAn integrative factor analysis model for drug-pathway association inference
ifaToolsToolkit for Item Factor Analysis with OpenMx
ifctoolsItalian Fiscal Code ('Codice Fiscale') Utilities
IFPIdentifying Functional Polymorphisms
ifsIterated Function Systems
ifultoolsInsightful Research Tools
iGassoStatistical Tests and Utilities for Genetic Association
IgorRRead Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data)
igraphNetwork Analysis and Visualization
igraphdataA Collection of Network Data Sets for the 'igraph' Package
igraphinshinyUse 'shiny' to Demo 'igraph'
igraphtosoniaConvert iGraph graps to SoNIA .son files
ig.vancouver.2014.topcolourInstagram 2014 Vancouver Top Colour Dataset
ihsInverse Hyperbolic Sine Distribution
iki.dataclimConsistency, Homogeneity and Summary Statistics of Climatological Data
iLaplaceImproved Laplace Approximation for Integrals of Unimodal Functions
ilcLee-Carter Mortality Models using Iterative Fitting Algorithms
ILSInterlaboratory Study
IMOrthogonal Moment Analysis
imageDataAids in Processing and Plotting Data from a Lemna-Tec Scananalyzer
imagerImage Processing Library Based on CImg
IMakItem Maker
ImapInteractive Mapping
imfrDownload Data from the International Monetary Fund's Data API
imguRAn API Client Package
IMISIncreamental Mixture Importance Sampling
immerItem Response Models for Multiple Ratings
IMPInteractive Model Performance Evaluation
IMPACTThe Impact of Items
ImpactIVIdentifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
imPoisImprecise Inferential Framework for Poisson Sampling Model
importAn Import Mechanism for R
ImportExportImport and Export Data
imprProbEstMinimum distance estimation in an imprecise probability model
imputeLCMDA collection of methods for left-censored missing data imputation
imputeMDRThe Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
imputeMissingsImpute Missing Values in a Predictive Context
imputeMultiImputation Methods for Multivariate Multinomial Data
imputePSFImpute Missing Data in Time Series Data with PSF Based Method
imputeTestbenchTest Bench for Missing Data Imputing Models/Methods Comparison
imputeTSTime Series Missing Value Imputation
imputeYnImputing the Last Largest Censored Observation(s) Under Weighted Least Squares
in2extRemesInto the extRemes Package
inarmixMixture models for longitudinal count data
inbreedRAnalysing Inbreeding Based on Genetic Markers
inctoolsIncidence Estimation Tools
IncucyteDRCDose Response Curves from Incucyte Proliferation Assays
IndependenceTestsNonparametric tests of independence between random vectors
indicspeciesRelationship Between Species and Groups of Sites
inegiRIntegrate INEGI’s (Mexican Stats Office) API with R
ineqMeasuring Inequality, Concentration, and Poverty
iNEXTInterpolation and Extrapolation for Species Diversity
InfDimInfine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories
inferenceFunctions to extract inferential values of a fitted model object
InferenceSMRInference about the standardized mortality ratio when evaluating the effect of a screening program on survival
inferferenceMethods for Causal Inference with Interference
inflectionFinds the Inflection Point of a Curve
influence.METools for Detecting Influential Data in Mixed Effects Models
influenceRSoftware Tools to Quantify Structural Importance of Nodes in a Network
influence.SEMCase Influence in Structural Equation Models
infoDecompuTEInformation Decomposition of Two-phase Experiments
InformationData Exploration with Information Theory (Weight-of-Evidence and Information Value)
InformationValuePerformance Analysis and Companion Functions for Binary Classification Models
informRSequence Statistics for Relational Event Models
infotheoInformation-Theoretic Measures
infraAn Infrastructure Proxy Function
infuserA Very Basic Templating Engine
InfusionInference Using Simulation
infutilInformation Utility
iniRead and Write '.ini' Files
injectoRR Dependency Injection
INLABMABayesian Model Averaging with INLA
inlineFunctions to Inline C, C++, Fortran Function Calls from R
inlinedocsConvert inline comments to documentation
inpdfrAnalyse Text Documents Using Ecological Tools
InPositionInference Tests for ExPosition
insideRODEinsideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes
InSilicoVAProbabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
insolSolar Radiation
InspectChangepointHigh-Dimensional Changepoint Estimation via Sparse Projection
install.loadCheck, Install and Load CRAN & USGS GRAN Packages
installrUsing R to Install Stuff (Such As: R, Rtools, RStudio, Git, and More!)
instaRAccess to Instagram API via R
insuranceDataA Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance
intamapprocedures for automated interpolation
intamapInteractiveprocedures for automated interpolation - methods only to be used interactively, not included in intamap package
IntClustIntegrated Data Analysis via Clustering
IntegrateBsIntegration for B-Spline
IntegratedJMJoint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
IntegratedMRFIntegrated Prediction using Univariate and Multivariate Random Forests
InteractTests for marginal interactions in a 2 class response model
interactionTestCalculates Critical Test Statistics to Control False Discovery and Familywise Error Rates in Marginal Effects Plots
InteractiveIGraphinteractive network analysis and visualization
InteratrixCompute Chi-Square Measures with Corrections
intercureCure Rate Estimators for Interval Censored Data
interferenceCIExact Confidence Intervals in the Presence of Interference
intergraphCoercion Routines for Network Data Objects
internetarchiveAn API Client for the Internet Archive
interplotPlot the Effects of Variables in Interaction Terms
InterpolInterpolation of amino acid sequences
Interpol.THourly interpolation of multiple temperature daily series
interpretRBinary Classifier and Regression Model Interpretation Functions
InterSIMSimulation of Inter-Related Genomic Datasets
InterVA4Replicate and Analyse InterVA4
intervalWeighted Logrank Tests and NPMLE for interval censored data
intervalsTools for Working with Points and Intervals
interventionalDBNInterventional Inference for Dynamic Bayesian Networks
IntLikNumerical Integration for Integrated Likelihood
IntNMFIntegrative Clustering of Multiple Genomic Dataset
intpointlinear programming solver by the interior point method and graphically (two dimensions)
inTreesInterpret Tree Ensembles
intRegInterval Regression
intRegGOFIntegrated Regression Goodness of Fit
introgressmethods for analyzing introgression between divergent lineages
intsvyInternational Assessment Data Manager
intubateInterface to Popular R Functions for Data Science Pipelines
InvariantCausalPredictionInvariant Causal Prediction
investrInverse Estimation/Calibration Functions
invgammaThe Inverse Gamma Distribution
invGaussThreshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data
invLTInversion of Laplace-Transformed Functions
ioA Unified Framework for Input-Output Operations in R
ioncopyCalling Copy Number Alterations in Amplicon Sequencing Data
ionflowsCalculate the Number of Required Flows for Semiconductor Sequencing
ionrTest for Indifference of Indicator
iopsychMethods for Industrial/Organizational Psychology
iosmoothFunctions for smoothing with infinite order flat-top kernels
iotoolsI/O Tools for Streaming
ipdmetaTools for subgroup analyses with multiple trial data using aggregate statistics
ipdwSpatial Interpolation by Inverse Path Distance Weighting
ipflassoIntegrative Lasso with Penalty Factors
ipfpFast Implementation of the Iterative Proportional Fitting Procedure in C
iplotsiPlots - interactive graphics for R
IPMpackBuilds and analyses Integral Projection Models (IPMs)
ipredImproved Predictors
ipsInterfaces to Phylogenetic Software in R
IPSURIntroduction to Probability and Statistics Using R
IPtoCountryConvert IP Addresses to Country Names or Full Location with Geoplotting
iptoolsManipulate, Validate and Resolve 'IP' Addresses
ipwEstimate Inverse Probability Weights
IQCCImproved Quality Control Charts
iqLearnInteractive Q-Learning
iqsprGenerate Chemical Strings (SMILES) with the Inverse QSPR Model
iraceIterated Racing Procedures
iRafNetIntegrative Random Forest for Gene Regulatory Network Inference
iRefRiRefIndex Manager
iRegressionRegression Methods for Interval-Valued Variables
iReproReproducibility for Interval-Censored Data
IRISMustangMetricsStatistics and Metrics for Seismic Data
IRISSeismicClasses and Methods for Seismic Data Analysis
irlbaFast Truncated SVD, PCA and Symmetric Eigendecomposition for Large Dense and Sparse Matrices
irrVarious Coefficients of Interrater Reliability and Agreement
irtDemoItem Response Theory Demo Collection
irtoysSimple interface to the estimation and plotting of IRT models
IRTppEstimating IRT Parameters using the IRT Methodology
irtProbUtilities and Probability Distributions Related to Multidimensional Person Item Response Models
irtreesEstimation of Tree-Based Item Response Models
IRTShinyItem Response Theory via Shiny
isa2The Iterative Signature Algorithm
ISBFIterative Selection of Blocks of Features - ISBF
isdalsProvides datasets for Introduction to Statistical Data Analysis for the Life Sciences
ISDA.Rinterval symbolic data analysis for R
IsingFitFitting Ising models using the eLasso method
isingLenzMCMonte Carlo for Classical Ising Model
IsingSamplerSampling Methods and Distribution Functions for the Ising Model
islandStochastic Island Biogeography Theory Made Easy
ISLRData for An Introduction to Statistical Learning with Applications in R
ismevAn Introduction to Statistical Modeling of Extreme Values
IsoFunctions to Perform Isotonic Regression
IsoCIConfidence intervals for current status data based on transformations and bootstrap
isocirIsotonic Inference for Circular data
ISOcodesSelected ISO Codes
IsoGeneOrder-Restricted Inference for Microarray Experiments
isopamIsopam (Clustering)
isopatCalculation of isotopic pattern for a given molecular formula
isophIsotonic Proportional Hazards Model
IsoplotRStatistical Toolbox for Radiometric Geochronology
ISOpureRDeconvolution of Tumour Profiles
isotoneActive Set and Generalized PAVA for Isotone Optimization
isotonic.penPenalized Isotonic Regression in one and two dimensions
IsotopeRStable Isotope Mixing Model
ISOweekWeek of the year and weekday according to ISO 8601
isvaIndependent Surrogate Variable Analysis
ISwRIntroductory Statistics with R
itcSegmentIndividual Tree Crowns Segmentation
ITEMANClassical Item Analysis
iteRatesParametric rate comparison
iteratorsProvides Iterator Construct for R
iterLapApproximate probability densities by iterated Laplace Approximations
iterpcEfficient Iterator for Permutations and Combinations
itertoolsIterator Tools
itertools2itertools2: Functions creating iterators for efficient looping
itreeTools for classification and regression trees, with an emphasis on interpretability
itsIrregular Time Series
itsadugInterpreting Time Series and Autocorrelated Data Using GAMMs
itsmrTime series analysis package for students
IUPSIncorporating Uncertainties in Propensity Scores
ivbmaBayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
ivfixedInstrumental fixed effect panel data model
ivlewbelUses heteroscedasticity to estimate mismeasured and endogenous regressor models
ivmodelStatistical Inference and Sensitivity Analysis for Instrumental Variables Model
ivpackInstrumental Variable Estimation
ivpanelInstrumental Panel Data Models
ivprobitInstrumental variables probit model
iWeigRegImproved methods for causal inference and missing data problems
iWISAWavelet-Based Index of Storm Activity
jaathaSimulation-Based Maximum Likelihood Parameter Estimation
jackknifeKMEJackknife Estimates of Kaplan-Meier Estimators or Integrals
jackstrawStatistical Inference of Variables Driving Systematic Variation
JacobiEigenClassical Jacobi Eigensolution Algorithm
jacpopJaccard Index for Population Structure Identification
JADEBlind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria
jagsUIA Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
JAGUARJoint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)
james.analysisAnalysis Tools for the 'JAMES' Framework
janeaustenrJane Austen's Complete Novels
JASPARR modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
JavaGDJava Graphics Device
JBToolsMisc Small Tools and Helper Functions for Other Code of J. Buttlar
jetsetOne-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays
JGEEJoint Generalized Estimating Equation Solver
JGLPerforms the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
JGRJGR - Java GUI for R
jiebaRChinese Text Segmentation
jiebaRDChinese Text Segmentation Data for jiebaR Package
JMJoint Modeling of Longitudinal and Survival Data
JMbayesJoint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
jmcmJoint Mean-Covariance Models using 'Armadillo' and S4
JMdesignJoint Modeling of Longitudinal and Survival Data - Power Calculation
jmetrikTools for Interacting with 'jMetrik'
JmiscJulian Miscellaneous Function
jmotifTime Series Analysis Toolkit Based on Symbolic Aggregate Dicretization, i.e. SAX
jmuOutlierPermutation Tests for Nonparametric Statistics
JohnsonJohnson Transformation
JohnsonDistributionJohnson Distribution
joineRJoint modelling of repeated measurements and time-to-event data
joint.CoxPenalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis
jointDiagJoint Approximate Diagonalization of a set of square matrices
JointModelSemiparametric Joint Models for Longitudinal and Counting Processes
jointPmRisk estimation using the joint probability method
JointRegBCJoint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach
jomoMultilevel Joint Modelling Multiple Imputation
JOPJoint Optimization Plot
JoSAEFunctions for some Unit-Level Small Area Estimators and their Variances
joseJavascript Object Signing and Encryption
jpegRead and write JPEG images
JPENCovariance and Inverse Covariance Matrix Estimation Using Joint Penalty
JPSurvMethods for population-based cancer survival analysis
jqrClient for 'jq', a JSON Processor
JRFJoint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks
jrichJack-Knife Support for Evolutionary Distinctiveness Indices I and W
jrvFinanceBasic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
jsTools for Working with JavaScript in R
jSonarRjSonar Analytics Platform API for R
jsonliteA Robust, High Performance JSON Parser and Generator for R
jsonvalidateValidate 'JSON'
jtGWASEfficient Jonckheere-Terpstra Test Statistics
jtransJohnson Transformation for Normality
jugCreate a Simple Web API for your R Functions
JuliaFractal Image Data Generator
junrAccess Open Data Through the Junar API
jvnVaRValue at Risk
KANTPackage to identify and sort genes overexpressed
kantorovichKantorovich Distance Between Probability Measures
KappaGUIGUI for Cohen's and Fleiss' Kappa
kappalabNon-Additive Measure and Integral Manipulation Functions
kappaSizeSample Size Estimation Functions for Studies of Interobserver Agreement
KappaVCalculates "vectorial Kappa", an index of congruence between patchy mosaics
kapsK-Adaptive Partitioning for Survival data
karaokeRemove Vocals from a Song
KATforDCEMRIKinetic analysis and visualization of DCE-MRI data
kcirtk-Cube Thurstonian IRT Models
kdecopulaKernel Smoothing for Bivariate Copula Densities
kdetreesNonparametric method for identifying discordant phylogenetic trees
keddKernel Estimator and Bandwidth Selection for Density and Its Derivatives
keepArrays with Better Control over Dimension Dropping
kehraCollect, Assemble and Model Air Pollution, Weather and Health Data
kelvinCalculate Solutions to the Kelvin Differential Equation using Bessel Functions
KendallKendall rank correlation and Mann-Kendall trend test
kequateThe Kernel Method of Test Equating
kerdiestNonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions
KEREExpectile Regression in Reproducing Kernel Hilbert Space
kergpGaussian Process Laboratory
kernDeepStackNetKernel Deep Stacking Networks
kerndwdDistance Weighted Discrimination (DWD) and Kernel Methods
kernelFactoryKernel Factory: An Ensemble of Kernel Machines
KernelheapingKernel Density Estimation for Heaped and Rounded Data
KernelKnnKernel k Nearest Neighbors
kernlabKernel-Based Machine Learning Lab
kernscrKernel Machine Score Test for Semi-Competing Risks
KernSmoothFunctions for Kernel Smoothing Supporting Wand & Jones (1995)
KernSmoothIRTNonparametric Item Response Theory
keyplayerLocating Key Players in Social Networks
keypressWait for a Key Press in a Terminal
KFASKalman Filter and Smoother for Exponential Family State Space Models
kfigrIntegrated Code Chunk Anchoring and Referencing for R Markdown Documents
KFKSDSKalman Filter, Smoother and Disturbance Smoother
kimiscKirill's Miscellaneous Functions
kin.cohortAnalysis of Kin-Cohort Studies
kineticFFramework for the Analysis of Kinetic Visual Field Data
kinfitRoutines for Fitting Kinetic Models to Chemical Degradation Data
kinnAn Implementation of 'kinn' Algorithm, a Graph Based Regression Model
kinship2Pedigree Functions
kissmiga Keep It Simple Species Migration Model
kitagawaSpectral response of water wells to harmonic strain and pressure
kknnWeighted k-Nearest Neighbors
klaRClassification and visualization
klausuRMultiple Choice Test Evaluation
klinLinear equations with Kronecker structure
kmcKaplan-Meier Estimator with Constraints for Right Censored Data – a Recursive Computational Algorithm
km.ciConfidence intervals for the Kaplan-Meier estimator
kmconfbandKaplan-Meier Simultaneous Confidence Band for the Survivor Function
KMDAKernel-Based Metabolite Differential Analysis
kmeans.ddRDistributed k-Means for Big Data using 'ddR' API
kmiKaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
KmiscKevin Miscellaneous
kmlK-Means for Longitudinal Data
kml3dK-Means for Joint Longitudinal Data
kmlcovClustering longitudinal data using the likelihood as a metric of distance
kmlShapeK-Means for Longitudinal Data using Shape-Respecting Distance
kmodRK-Means with Simultaneous Outlier Detection
KMsurvData sets from Klein and Moeschberger (1997), Survival Analysis
knitcitationsCitations for 'Knitr' Markdown Files
knitLatex'Knitr' Helpers - Mostly Tables
knitrA General-Purpose Package for Dynamic Report Generation in R
knitrBootstrapKnitr Bootstrap Framework
knncatNearest-neighbor Classification with Categorical Variables
knnGardenMulti-distance based k-Nearest Neighbors
knnIndepIndependence tests and benchmarks
knockoffKnockoff Filter for Controlling the False Discovery Rate
kobeTools for the provision of scientific fisheries management advice
KODAMAKnowledge discovery by accuracy maximization
kofnGAA Genetic Algorithm for Fixed-Size Subset Selection
KOGMWUFunctional Summary and Meta-Analysis of Gene Expression Data
kohonenSupervised and Unsupervised Self-Organising Maps
kolmimAn Improved Evaluation of Kolmogorov's Distribution
KoNLPKorean NLP Package
koRpusAn R Package for Text Analysis
KoulMdeKoul's Minimum Distance Estimation in Linear Regression and Autoregression Model
KpartCubic Spline Fitting with Knot Selection
kpodclustrMethod for Clustering Partially Observed Data
kriensContinuation Passing Style Development
krigingOrdinary Kriging
KrigInvKriging-based Inversion for Deterministic and Noisy Computer Experiments
KRLSKernel-based Regularized Least squares (KRLS)
krmKernel Based Regression Models
ksKernel Smoothing
kSamplesK-Sample Rank Tests and their Combinations
KScorrectLilliefors-Corrected Kolmogorov-Smirnoff Goodness-of-Fit Tests
KSDKernelized Stein Discrepancy
kselectionSelection of K in K-Means Clustering
ksrliveIdentify Kinase Substrate Relationships Using Dynamic Data
kstKnowledge Space Theory
ktsolveConfigurable function for solving families of nonlinear equations
ktspairk-Top Scoring Pairs for Microarray Classification
kulifeDatasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen
kwb.hantushCalculation of Groundwater Mounding Beneath an Infiltration Basin
kyotilUtility Functions by Youyi, Krisz and Others
kzaKolmogorov-Zurbenko Adaptive Filters
kzftKolmogorov-Zurbenko Fourier Transform and Applications
kzsKolmogorov-Zurbenko Spatial Smoothing and Applications
l0araSparse Generalized Linear Model with L0 Approximation for Feature Selection
L1packRoutines for L1 Estimation
l2boostl2boost - Friedman's boosting algorithm for regularized linear regression
labdsvOrdination and Multivariate Analysis for Ecology
labeledLoopLabeled Loop
labelingAxis Labeling
labelledManipulating Labelled Data
labelrankPredicting Rankings of Labels
label.switchingRelabelling MCMC Outputs of Mixture Models
labeltodendroConvert labels or tables to a dendrogram
labstatRLibreria Del Laboratorio Di Statistica Con R
labstatsData Sets for the Book "Experimental Design for Laboratory Biologists"
laekenEstimation of indicators on social exclusion and poverty
laercioDuncan test, Tukey test and Scott-Knott test
LaFFast access to large ASCII files
laGPLocal Approximate Gaussian Process Regression
LahmanSean Lahman's Baseball Database
LakeMetabolizerTools for the Analysis of Ecosystem Metabolism
lakemorphoLake Morphometry Metrics in R
laketempsLake Temperatures Collected by Situ and Satellite Methods from 1985-2009
Lambda4Collection of Internal Consistency Reliability Coefficients
lambda.rModeling Data with Functional Programming
lambda.toolsTools for Modeling Data with Functional Programming
LambertWProbabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data
lamWLambert-W Function
LANDDLiquid Association for Network Dynamics Detection
landestLandmark Estimation of Survival and Treatment Effect
landpredLandmark Prediction of a Survival Outcome
landsatRadiometric and topographic correction of satellite imagery
landsat8Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature
landscapeRCategorical Landscape Simulation Facility
LangevinLangevin Analysis in One and Two Dimensions
languageRData sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"
LaplaceDeconvLaplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval
LaplacesDemonComplete Environment for Bayesian Inference
larHistory of labour relations package
LARFLocal Average Response Functions for Instrumental Variable Estimation of Treatment Effects
largeListSerialization Interface for Large List Objects
larsLeast Angle Regression, Lasso and Forward Stagewise
laserLikelihood Analysis of Speciation/Extinction Rates from Phylogenies
lasso2L1 constrained estimation aka ‘lasso’
LassoBacktrackingModelling Interactions in High-Dimensional Data with Backtracking
lassoscoreHigh-Dimensional Inference with the Penalized Score Test
lassoshootingL1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
lasvmRA Simple Wrapper for the LASVM Solver
latdiagDraws Diagrams Useful for Checking Latent Scales
latentnetLatent Position and Cluster Models for Statistical Networks
LateralityFunctions to Calculate Common Laterality Statistics in Primatology
latex2expUse LaTeX Expressions in Plots
latticeTrellis Graphics for R
latticeDensityDensity estimation and nonparametric regression on irregular regions
latticeExtraExtra Graphical Utilities Based on Lattice
LatticeKrigMultiresolution Kriging Based on Markov Random Fields
lavaLatent Variable Models
lavaanLatent Variable Analysis
lavaan.shinyLatent Variable Analysis with Shiny
lavaan.surveyComplex Survey Structural Equation Modeling (SEM)
lava.tobitLVM with censored and binary outcomes
lawnClient for 'Turfjs' for 'Geospatial' Analysis
lawstatTools for Biostatistics, Public Policy, and Law
lazyLazy Learning for Local Regression
lazyDataA LazyData Facility
lazyevalLazy (Non-Standard) Evaluation
lazysqlLazy SQL Programming
lazyWeaveLaTeX Wrappers for R Users
lbaLatent Budget Analysis for Compositional Data
lbfgsLimited-memory BFGS Optimization
lbfgsb3Limited Memory BFGS Minimizer with Bounds on Parameters
lbiassurvLength-biased correction to survival curve estimation
LCALocalised Co-Dependency Analysis
LCAextendLatent Class Analysis (LCA) with familial dependence in extended pedigrees
lcdaLatent Class Discriminant Analysis
LCFdataData sets for package “LMERConvenienceFunctions”
LCMCRBayesian Nonparametric Latent-Class Capture-Recapture
lcmmExtended Mixed Models Using Latent Classes and Latent Processes
lcopulaLiouville Copulas
lctoolsLocal Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools
ldaCollapsed Gibbs Sampling Methods for Topic Models
ldamatchSelection of Statistically Similar Research Groups
ldatuningTuning of the LDA Models Parameters
LDAvisInteractive Visualization of Topic Models
ldboundsLan-DeMets Method for Group Sequential Boundaries
LDcorSVLinkage disequilibrium corrected by the structure and the relatedness
LDheatmapGraphical display of pairwise linkage disequilibria between SNPs
ldlassoLD LASSO Regression for SNP Association Study
LDODFinding Locally D-optimal optimal designs for some nonlinear and generalized linear models
LDPDProbability of Default Calibration
ldrMethods for likelihood-based dimension reduction in regression
LDRToolsTools for Linear Dimension Reduction
LDtestsExact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
leaderClusterLeader Clustering Algorithm
LeafAngleAnalysis and Visualization of Plant Leaf Angle Distributions
LeafAreaRapid Digital Image Analysis of Leaf Area
leafletCreate Interactive Web Maps with the JavaScript 'Leaflet' Library
leafletRInteractive Web-Maps Based on the Leaflet JavaScript Library
LEAPConstructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
LEAPFrOGLikelihood Estimation of Admixture in Parents From Offspring Genotypes
leapplatent effect adjustment after primary projection
leapsregression subset selection
LearnBayesFunctions for Learning Bayesian Inference
learningrData and functions to accompany the book "Learning R"
learNNExamples of Neural Networks
learnstatsAn Interactive Environment for Learning Statistics
lefsePhylogenetic and Functional Analyses for Ecology
leivBivariate Linear Errors-In-Variables Estimation
LeLogicielRFunctions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
lessRLess Code, More Results
lestatA package for LEarning STATistics
letsRTools for Data Handling and Analysis in Macroecology
lettercaseUtilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space
LexisPlotRPlot Lexis Diagrams for Demographic Purposes
lfactorsFactors with Levels
lfdaLocal Fisher Discriminant Analysis
LFDR.MLEEstimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation
lfeLinear Group Fixed Effects
lflLinguistic Fuzzy Logic
lfstatCalculation of Low Flow Statistics for Daily Stream Flow Data
lgaTools for linear grouping analysis (LGA)
lgarchSimulation and Estimation of Log-GARCH Models
lgcpLog-Gaussian Cox Process
LGEWISTests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies
LGRFSet-Based Tests for Genetic Association in Longitudinal Studies
lgtdlA set of methods for longitudinal data objects
lhsLatin Hypercube Samples
libamtrackComputational Routines for Proton and Ion Radiotherapy
LiblineaRLinear Predictive Models Based on the LIBLINEAR C/C++ Library
LiblineaR.ACFLinear Classification with Online Adaptation of Coordinate Frequencies
LibraLinearized Bregman Algorithms for Generalized Linear Models
LICORSLight Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
LICurvatureSensitivity Analysis for Case Weight in Normal Linear Regression
lifecontingenciesFinancial and Actuarial Mathematics for Life Contingencies
lifecourseQuantification of Lifecourse Fluidity
LifeHistLife History Models of Individuals
LifeTablesTwo-Parameter HMD Model Life Table System
liftCompute the Top Decile Lift and Plot the Lift Curve
liftrDockerize R Markdown Documents
LightningRTools for Communication with Lightning-Viz Server
lightsoutImplementation of the 'Lights Out' Puzzle Game
LIHNPSDPoisson Subordinated Distribution
likelihoodMethods for Maximum Likelihood Estimation
likelihoodAsyFunctions for Likelihood Asymptotics
likeLTDTools to Evaluate DNA Profile Evidence
likertFunctions to Analyze and Visualize Likert Type Items
LIMLinear Inverse Model examples and solution methods
limitplotJitter/CI Plot with Ordered Points Below the Limit of Detection
limSolveSolving Linear Inverse Models
linbinBinning and Plotting of Linearly Referenced Data
LinCalStatic Univariate Frequentist and Bayesian Linear Calibration
LindenmayeRFunctions to Explore L-Systems (Lindenmayer Systems)
LindleyRThe Lindley Distribution and Its Modifications
LinearizedSVRLinearized Support Vector Regression
LinearRegressionMDEMinimum Distance Estimation in Linear Regression Model
linear.toolsManipulate Formulas and Evaluate Marginal Effects
linERRLinear Excess Relative Risk Model
lineupLining Up Two Sets of Measurements
linkcommTools for Generating, Visualizing, and Analysing Link Communities in Networks
LinkedMatrixColumn-Linked and Row-Linked Matrices
linkimLinkage information based genotype imputation method
linkR3D Lever and Linkage Mechanism Modeling
linLIRlinear Likelihood-based Imprecise Regression
linprogLinear Programming / Optimization
LinRegInteractiveInteractive Interpretation of Linear Regression Models
LINselectSelection of Linear Estimators
lintTools to check R code style
lintoolsManipulation of Linear Systems of (in)Equalities
lintrStatic R Code Analysis
liraLInear Regression in Astronomy
lisoFitting lasso penalised additive isotone models
lispList-processing à la SRFI-1
lisrelToRImport output from LISREL into R
listStatistical Methods for the Item Count Technique and List Experiment
listenvEnvironments Behaving (Almost) as Lists
LIStestTests of independence based on the Longest Increasing Subsequence
listviewer'htmlwidget' for Interactive Views of R Lists
listWithDefaultsList with Defaults
littlerR at the Command-Line via 'r'
livechatRR Wrapper for LiveChat REST API
ljrLogistic Joinpoint Regression
llamaLeveraging Learning to Automatically Manage Algorithms
lleLocally linear embedding
lllcrcLocal Log-linear Models for Capture-Recapture
LLSRData Analysis of Liquid-Liquid Systems
lm.betaAdd Standardized Regression Coefficients to lm-Objects
lm.brLinear Model with Breakpoint
lme4Linear Mixed-Effects Models using 'Eigen' and S4
lmecLinear Mixed-Effects Models with Censored Responses
lmem.gwaserLinear Mixed Effects Models for Genome-Wide Association Studies
lmem.qtlerLinear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis
lmeNBCompute the Personalized Activity Index Based on a Negative Binomial Model
lmeNBBayesCompute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model
lmensspLinear Mixed Effects Models with Non-Stationary Stochastic Processes
LMERConvenienceFunctionsModel Selection and Post-hoc Analysis for (G)LMER Models
lmeresamplerBootstrap Methods for Nested Linear Mixed-Effects Models
lmerTestTests in Linear Mixed Effects Models
lmeSplinesAdd smoothing spline modelling capability to nlme
LMestLatent Markov Models with and without Covariates
lmeVarCompTesting for a subset of variance components in linear mixed models
lmfFunctions for estimation and inference of selection in age-structured populations
lmforFunctions for Forest Biometrics
lmmLinear Mixed Models
lmmlassoLinear mixed-effects models with Lasso
lmmotMultiple Ordinal Tobit (MOT) Model
lmmsLinear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data
lmodel2Model II Regression
lmomcoL-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions
LmomentsL-Moments and Quantile Mixtures
lmomRFARegional frequency analysis using L-moments
lmSupportSupport for Linear Models
lmtestTesting Linear Regression Models
LncModPredicting Modulator and Functional/Survival Analysis
LncPathIdentifying the Pathways Regulated by LncRNA Sets of Interest
LncPriCNetPrioritizing Candidate LncRNAs Based on a Composite Multi-Level Network
loaLattice Options and Add-Ins
localdepthLocal Depth
localgaussEstimating Local Gaussian Parameters
localsolverR API to LocalSolver
locfdrComputes Local False Discovery Rates
LocFDRPoisFunctions for Performing Local FDR Estimation when Null and Alternative are Poisson
locfitLocal Regression, Likelihood and Density Estimation
locitsTest of Stationarity and Localized Autocovariance
Lock5DataDatasets for "Statistics: UnLocking the Power of Data"
Lock5withRDatasets for 'Statistics: Unlocking the Power of Data'
locpolKernel local polynomial regression
lodGWASGenome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection
loeLocal Ordinal Embedding
log4rA simple logging system for R, based on log4j
logbinRelative Risk Regression Using the Log-Binomial Model
LogConcDEADLog-concave Density Estimation in Arbitrary Dimensions
logconcensMaximum likelihood estimation of a log-concave density based on censored data
logcondensEstimate a Log-Concave Probability Density from Iid Observations
logcondens.modeCompute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode
logcondiscrEstimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations
logconPHCoxPH Model with Log Concave Baseline Distribution
loggingR logging package
LogicForestLogic Forest
LOGICOILLOGICOIL: multi-state prediction of coiled-coil oligomeric state
LogicOptTruth Table Logic Optimizer
LogicRegLogic Regression
logistfFirth's bias reduced logistic regression
LogisticDxDiagnostic Tests for Models with a Binomial Response
logisticPCABinary Dimensionality Reduction
LOGITFunctions, Data and Code for Binary and Binomial Data
logitchoiceFitting l2-regularized logit choice models via generalized gradient descent
LogitNetInfer network based on binary arrays using regularized logistic regression
logitnormFunctions for the logitnormal distribution
loglognormDouble log normal distribution functions
logmultLog-Multiplicative Models, Including Association Models
LogrankALogrank Test for Aggregated Survival Data
logsplineLogspline Density Estimation Routines
lokernKernel Regression Smoothing with Local or Global Plug-in Bandwidth
lombLomb-Scargle Periodogram
longCatEDAPackage for Plotting Categorical Longitudinal and Time-Series Data
longclustModel-Based Clustering and Classification for Longitudinal Data
longitudinalAnalysis of Multiple Time Course Data
longitudinalDataLongitudinal Data
longmemoStatistics for Long-Memory Processes (Jan Beran) – Data and Functions
longpowerSample Size Calculations for Longitudinal Data
longurlExpand Short URLs Using the 'LongURL' API
looEfficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
lookupTableLook-Up Tables using S4
looploop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
LoopAnalystA Collection of Tools to Conduct Levins' Loop Analysis
looprUses an Archive to Amend Previous Stages of a Pipe using Current Output
lordifLogistic Ordinal Regression Differential Item Functioning using IRT
lorecLOw Rand and sparsE Covariance matrix estimation
LOSTMissing Morphometric Data Simulation and Estimation
LotkasLawRuns Lotka's Law which is One of the Special Applications of Zipf's Law
LowRankQPLow Rank Quadratic Programming
lpbrimLP-BRIM Bipartite Modularity
lpcLassoed principal components for testing significance of features
LPCMLocal Principal Curve Methods
lpintLocal polynomial estimators of intensity function or its derivatives
LPMLinear Parametric Models Applied to Hydrological Series
lpmeLocal Polynomial Estimator in Measurement Error Models
LPmergeMerging linkage maps by linear programming
lpmodelerModeler for linear programs (LP) and mixed integer linear programs (MILP)
LPRLasso and Partial Ridge
lpridgeLocal Polynomial (Ridge) Regression
LPSLinear Predictor Score, for Binary Inference from Multiple Continuous Variables
lpSolveInterface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
lpSolveAPIR Interface to 'lp_solve' Version
LPStimeSeriesLearned Pattern Similarity and Representation for Time Series
LPTimeLP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling
lqaPenalized Likelihood Inference for GLMs
lqmmLinear Quantile Mixed Models
lqrRobust Linear Quantile Regression
LRcontrastDose Response Signal Detection under Model Uncertainty
lrequireSources an R "Module" with Caching & Encapsulation, Returning Exported Vars
lrgsLinear Regression by Gibbs Sampling
lrmestDifferent Types of Estimators to Deal with Multicollinearity
LRTHA Likelihood Ratio Test Accounting for Genetic Heterogeneity
LS2WLocally stationary two-dimensional wavelet process estimation scheme
LS2WstatA Multiscale Test of Spatial Stationarity for LS2W processes
lsaLatent Semantic Analysis
LSAfunApplied Latent Semantic Analysis (LSA) Functions
lsbclustLeast-Squares Bilinear Clustering for Three-Way Data
LSCLocal Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
LSDLots of Superior Depictions
LSDinterfaceReading LSD Results (.res) Files
lsdvLeast square dummy variable regression
lseiSolving Least Squares Problems under Equality/Inequality Constraints
lsglLinear Sparse Group Lasso
lshorthThe Length of the Shorth
lslLatent Structure Learning
lsmeansLeast-Squares Means
LSMonteCarloAmerican options pricing with Least Squares Monte Carlo method
LSPFPLysate and Secretome Peptide Feature Plotter
lsplsLS-PLS Models
lsrCompanion to "Learning Statistics with R"
lssthe accelerated failure time model to right censored data based on least-squares principle
LSTSLocally Stationary Time Series
ltbayesSimulation-Based Bayesian Inference for Latent Traits of Item Response Models
ltmLatent Trait Models under IRT
ltmleLongitudinal Targeted Maximum Likelihood Estimation
LTPDvarLTPD and AOQL Plans for Acceptance Sampling Inspection by Variables
LTRPerform LTR analysis on microarray data
LTRCtreesSurvival Trees to Fit Left-Truncated and Right-Censored Survival Data
ltsaLinear Time Series Analysis
ltsbaseRidge and Liu Estimates based on LTS (Least Trimmed Squares) Method
ltskLocal Time Space Kriging
lubridateMake Dealing with Dates a Little Easier
lucaLikelihood inference from case-control data Under Covariate Assumptions (LUCA)
lucidPrinting Floating Point Numbers in a Human-Friendly Format
lucrCurrency Formatting and Conversion
lulccLand Use Change Modelling in R
lumendbLumen Database API Client
LuminescenceComprehensive Luminescence Dating Data Analysis
lunarLunar Phase & Distance, Seasons and Other Environmental Factors
luzlogrLightweight Logging for R Scripts
lvm4netLatent Variable Models for Networks
LVMMCORA Latent Variable Model for Mixed Continuous and Ordinal Responses
lvplotLetter Value 'Boxplots'
LW1949An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949)
lxbFast LXB File Reader
lymphclonAccurate Estimation of Clonal Coincidences and Abundances from Biological Replicates
M3Reading M3 files
M4compData from the M4 Time Series Forecasting Competition
m4feModels for Financial Economics
maboostBinary and Multiclass Boosting Algorithms
MAcMeta-Analysis with Correlations
machinaMachina Time Series Generation and Backtesting
machQAQA Machina Indicators
macleishRetrieve Data from MacLeish Field Station
MAclinicalClass prediction based on microarray data and clinical parameters
MAdMeta-Analysis with Mean Differences
madaMeta-Analysis of Diagnostic Accuracy
maddisonMaddison Project Database
madnessAutomatic Differentiation of Multivariate Operations
madsMulti-Analysis Distance Sampling
madsimA Flexible Microarray Data Simulation Model
MaeswrapWrapper Functions for MAESTRA/MAESPA
magclassData Class and Tools for Handling Spatial-Temporal Data
magiccreate and investigate magic squares
magicaxisPretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support
magickAdvanced Image-Processing in R
magrittrA Forward-Pipe Operator for R
maGUIA Graphical User Interface for Microarray Data Analysis
mailSending Email Notifications from R
mailRA Utility to Send Emails from R
MAINT.DataModel and Analyse Interval Data
MakefileRCreate 'Makefiles' Using R
makeProjectCreates an empty package framework for the LCFD format
MALDIquantQuantitative Analysis of Mass Spectrometry Data
MALDIquantForeignImport/Export Routines for MALDIquant
malletA wrapper around the Java machine learning tool MALLET
MAMAMeta-Analysis of MicroArray
MAMSDesigning multi-arm multi-stage studies
MAMSECalculation of Minimum Averaged Mean Squared Error (MAMSE) weights
managelocalrepoManage a CRAN-Style Local Repository
MANCIEMatrix Analysis and Normalization by Concordant Information Enhancement
mangoTrainingMango Solutions Training Datasets
manhattanlyInteractive Q-Q and Manhattan Plots Using 'plotly.js'
manifestoRAccess and Process Data and Documents of the Manifesto Project
manipulateInteractive Plots for RStudio
ManlyMixManly Mixture Modeling and Model-Based Clustering
MANOVA.RMAnalysis of Multivariate Data and Repeated Measures Designs
ManyTestsMultiple testing procedures of Cox (2011) and Wang and Cox (2007)
Map2NCBIMapping Markers to the Nearest Genomic Feature
MAPAMultiple Aggregation Prediction Algorithm
mapdataExtra Map Databases
mapfitA Tool for PH/MAP Parameter Estimation
MapGAMMapping Smoothed Effect Estimates from Individual-Level Data
MAPLESSmoothed age profile estimation
mapmiscUtilities for Producing Maps
mapplotsData Visualisation on Maps
mapprojMap Projections
mapr'Visualize' Species Occurrence Data
mapsDraw Geographical Maps
mapStatsGeographic Display of Survey Data Statistics
maptoolsTools for Reading and Handling Spatial Objects
maptpxMAP Estimation of Topic Models
maptreeMapping, pruning, and graphing tree models
mapviewInteractive Viewing of Spatial Objects in R
mArMultivariate AutoRegressive analysis
MAR1Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
mar1sMultiplicative AR(1) with Seasonal Processes
marchMarkov Chains
marelacTools for Aquatic Sciences
MareyMapEstimation of Meiotic Recombination Rates Using Marey Maps
margApproximate marginal inference for regression-scale models
marimaMultivariate ARIMA and ARIMA-X Analysis
markdown'Markdown' Rendering for R
markedMark-Recapture Analysis for Survival and Abundance Estimation
maRketSimMarket simulator for R
markmyassignmentAutomatic Marking of R Assignments
markophyloMarkov Chain Models for Phylogenetic Trees
markovchainEasy Handling Discrete Time Markov Chains
MarkowitzRStatistical Significance of the Markowitz Portfolio
marlMultivariate Analysis Based on Relative Likelihoods
marmapImport, Plot and Analyze Bathymetric and Topographic Data
marqLevAlgAn algorithm for least-squares curve fitting
MARSSMultivariate Autoregressive State-Space Modeling
maSAEMandallaz' Model-Assisted Small Area Estimators
masonBuild Data Structures for Common Statistical Analysis
MASSSupport Functions and Datasets for Venables and Ripley's MASS
MASSTIMATEBody Mass Estimation Equations for Vertebrates
MasterBayesML and MCMC Methods for Pedigree Reconstruction and Analysis
MATMultidimensional Adaptive Testing
MATAModel-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
MatchingMultivariate and Propensity Score Matching with Balance Optimization
MatchingFrontierComputation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference
matchingMarketsAnalysis of Stable Matchings
matchingRMatching Algorithms in R and C++
MatchItMatchIt: Nonparametric Preprocessing for Parametric Casual Inference
MatchLinRegCombining Matching and Linear Regression for Causal Inference
matchMultiOptimal Multilevel Matching using a Network Algorithm
matconvA Code Converter from the Matlab/Octave Language to R
mateableTools to Assess Mating Potential in Space and Time
mathgraphDirected and undirected graphs
matieMeasuring Association and Testing Independence Efficiently
matlabMATLAB emulation package
matlabrAn Interface for MATLAB using System Calls
matlibMatrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics
matpowmatrix powers
matRMetagenomics Analysis Tools for R
MatrixSparse and Dense Matrix Classes and Methods
matrixcalcCollection of functions for matrix calculations
MatrixCorrelationMatrix Correlation Coefficients
MatrixEQTLMatrix eQTL: Ultra fast eQTL analysis via large matrix operations
matrixLaplacianNormalized Laplacian Matrix and Laplacian Map
MatrixModelsModelling with Sparse And Dense Matrices
matrixplsMatrix-Based Partial Least Squares Estimation
matrixStatsFunctions that Apply to Rows and Columns of Matrices (and to Vectors)
Matrix.utilsData.frame-Like Operations on Sparse and Dense Matrix Objects
MATTOOLSModern Calibration Functions for the Modern Analog Technique (MAT)
MAVISMeta Analysis via Shiny
MAVTgsaThree methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest
MaXactExact max-type Cochran-Armitage trend test(CATT)
maxentLow-memory Multinomial Logistic Regression with Support for Text Classification
MaxentVariableSelectionSelecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling
maxLikMaximum Likelihood Estimation and Related Tools
maxlikeModel species distributions by estimating the probability of occurrence using presence-only data
MaxProMaximum Projection Designs
MaxSkewOrthogonal Data Projections with Maximal Skewness
maxstatMaximally Selected Rank Statistics
MazamaSpatialUtilsMazama Science Spatial Data Download and Utility Functions
MBAMultilevel B-spline Approximation
mbbefdMaxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling
MBCluster.SeqModel-Based Clustering for RNA-seq Data
mbestMoment-Based Estimation for Hierarchical Models
MBI(M)ultiple-site (B)iodiversity (I)ndices Calculator
mblmMedian-Based Linear Models
MBmcaNucleic Acid Melting Curve Analysis on Microbead Surfaces with R
mbmdrModel Based Multifactor Dimensionality Reduction
mboostModel-Based Boosting
MBTArAccess Data from the Massachusetts Bay Transit Authority (MBTA) Web API
mBvsMultivariate Bayesian Variable Selection Method Exploiting Dependence among Outcomes
mc2dTools for Two-Dimensional Monte-Carlo Simulations
MC2toPathTranslates information from netcdf files with MC2 output into inter-PVT transitions
MCAPSMCAPS data and results
mcbiopiMatrix Computation Based Identification Of Prime Implicants
mccMoment Corrected Correlation
mcclustProcess an MCMC Sample of Clusterings
MCDAFunctions to Support the Multicriteria Decision Aiding Process
MCDMMulti-Criteria Decision Making Methods
mcemGLMMaximum Likelihood Estimation for Generalized Linear Mixed Models
mcgaMachine Coded Genetic Algorithms for Real-Valued Optimization Problems
mcgibbsitWarnes and Raftery's MCGibbsit MCMC diagnostic
mcglmMultivariate Covariance Generalized Linear Models
mcGlobaloptimGlobal optimization using Monte Carlo and Quasi Monte Carlo simulation
mcheatmapsMultiple matrices heatmap visualization
MChtestMonte Carlo hypothesis tests with Sequential Stopping
MCIMultiplicative Competitive Interaction (MCI) Model
mcIRTIRT models for multiple choice items (mcIRT)
MCLMarkov Cluster Algorithm
mcllMonte Carlo Local Likelihood Estimation
mclogitMixed Conditional Logit
mclustGaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
mcmcMarkov Chain Monte Carlo
MCMC4ExtremesPosterior Distribution of Extreme Value Models in R
MCMCglmmMCMC Generalised Linear Mixed Models
MCMC.OTUBayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
MCMCpackMarkov Chain Monte Carlo (MCMC) Package
mcmcplotsCreate Plots from MCMC Output
MCMC.qpcrBayesian Analysis of qRT-PCR Data
mcmcseMonte Carlo Standard Errors for MCMC
mcoMultiple Criteria Optimization Algorithms and Related Functions
McompData from the M-competitions
MConjointConjoint Analysis through Averaging of Multiple Analyses
mcPAFitEstimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo
MCPANMultiple Comparisons Using Normal Approximation
mcparallelDoA Simplified Interface for Running Commands on Parallel Processes
MCPermA Monte Carlo permutation method for multiple test correlation
MCPModDesign and Analysis of Dose-Finding Studies (see also DoseFinding package)
mcprofileMultiple Contrast Profiles
mcrMethod Comparison Regression
MCSModel Confidence Set Procedure
mcsmFunctions for Monte Carlo Methods with R
McSpatialNonparametric spatial data analysis
mctestMulticollinearity Diagnostic Measures
MCTMMarkov Chains Transition Matrices
mdSelecting Bandwidth for Kernel Density Estimator with Minimum Distance Method
mdaMixture and Flexible Discriminant Analysis
mdatoolsMultivariate Data Analysis for Chemometrics
mdedMeasuring the Difference Between Two Empirical Distributions
mdhglmMultivariate Double Hierarchical Generalized Linear Models
MDimNormnMulti-Dimensional MA Normalization for Plate Effect
MDMMultinomial Diversity Model
MDMRMultivariate Distance Matrix Regression
MDplotVisualising Molecular Dynamics Analyses
MDPtoolboxMarkov Decision Processes toolbox
MDRDetect gene-gene interactions using multifactor dimensionality reduction
mdscoreImproved Score Tests for Generalized Linear Models
mdsdtFunctions for Analysis of Data with General Recognition Theory
MDSGUIA GUI for interactive MDS in R
MeanShiftClustering via the Mean Shift Algorithm
measurementsTools for Units of Measurement
measuRingDetection and Control of Tree-Ring Widths on Scanned Image Sections
mebootMaximum Entropy Bootstrap for Time Series
mederrRankBayesian Methods for Identifying the Most Harmful Medication Errors
medflexFlexible Mediation Analysis Using Natural Effect Models
MediaKCalculate MeDiA_K Distance
MedianaClinical Trial Simulations
mediationCausal Mediation Analysis
medicalriskMedical Risk and Comorbidity Tools for ICD-9-CM Data
MedOrMedian Ordering Statistical R package
medSTCA max-margin supervised Sparse Topical Coding Model
MEETMEET: Motif Elements Estimation Toolkit
mefaMultivariate Data Handling in Ecology and Biogeography
mefa4Multivariate Data Handling with S4 Classes and Sparse Matrices
megapteraMEGAPhylogeny Techniques in R
MEGENAMultiscale Clustering of Geometrical Network
meiflyInteractive model exploration using GGobi
memMoving Epidemic Method R Package
memgeneSpatial pattern detection in genetic distance data using Moran's Eigenvector Maps
memiscTools for Management of Survey Data and the Presentation of Analysis Results
memoiseMemoisation of Functions
MEMSSData sets from Mixed-effects Models in S
memuseMemory Estimation Utilities
MenuCollectionCollection of Configurable GTK+ Menus
MergeGUIA GUI for Merging Datasets in R
merrorAccuracy and Precision of Measurements
merToolsTools for Analyzing Mixed Effect Regression Models
MESSMiscellaneous Esoteric Statistical Scripts
metaGeneral Package for Meta-Analysis
meta4diagMeta-Analysis for Diagnostic Test Studies
MetABELMeta-analysis of genome-wide SNP association results
MetabolAnalyzeProbabilistic latent variable models for metabolomic data
metabolomicsAnalysis of Metabolomics Data
metacomAnalysis of the 'Elements of Metacommunity Structure'
metacorMeta-analysis of correlation coefficients
MetaCycleEvaluate Periodicity in Large Scale Data
MetaDEMetaDE: Microarray meta-analysis for differentially expressed gene detection
metafolioMetapopulation simulations for conserving salmon through portfolio optimization
metaforMeta-Analysis Package for R
metafuseFused Lasso Approach in Regression Coefficient Clustering
metagearComprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis
metagenInference in Meta Analysis and Meta Regression
metaheurMetaheuristic Optimization Framework for Preprocessing Combinations
MetaLandSimLandscape and Range Expansion Simulation
metaLikLikelihood Inference in Meta-Analysis and Meta-Regression Models
metaMAMeta-analysis for MicroArrays
metamiscDiagnostic and prognostic meta analysis (metamisc)
metaMixBayesian Mixture Analysis for Metagenomic Community Profiling
metansueMeta-Analysis of Studies with Non Statistically-Significant Unreported Effects
metapMeta-Analysis of Significance Values
MetaPathPerform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
MetaPCAMetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
metaplotrCreates CrossHairs Plots for Meta-Analyses
metaplusRobust Meta-Analysis and Meta-Regression
MetaQCMetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
metaRNASeqMeta-analysis of RNA-seq data
metaSEMMeta-Analysis using Structural Equation Modeling
metasensAdvanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis
MetaSKATMeta Analysis for SNP-Set (Sequence) Kernel Association Test
metatestFit and test metaregression models
MetatronMeta-analysis for Classification Data and Correction to Imperfect Reference
meteoSpatio-Temporal Analysis and Mapping of Meteorological Observations
meteoForecastNumerical Weather Predictions
meteogRamTools for plotting meteograms
meteRFitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)
MetFnsAnalysis of Visual Meteor Data
Meth27QCMeth27QC: sample quality analysis, and sample control analysis
MethCompFunctions for Analysis of Agreement in Method Comparison Studies
MethplotVisualize the methylation patterns
MethyBayesFull Bayesian Partition Model for Identifying Differentially Methylated Loci
MethylCapSigDetection of Differentially Methylated Regions using MethylCap-Seq Data
MetNormStatistical Methods for Normalizing Metabolomics Data
MetProcSeparate Metabolites into Likely Measurement Artifacts and True Metabolites
MetricsEvaluation metrics for machine learning
metricsgraphicsCreate Interactive Charts with the JavaScript 'MetricsGraphics' Library
metricTesterTest Metric and Null Model Statistical Performance
metRologySupport for metrological applications
metsAnalysis of Multivariate Event Times
MetSizeRGUI Tool for Estimating Sample Sizes for Metabolomic Experiments
MetStaTStatistical metabolomics tools
mevMultivariate Extreme Value Distributions
mewAvgA Fixed Memeory Moving Expanding Window Average
mexhazMixed Effect Excess Hazard Models
MExPositionMulti-table ExPosition
MFMitigated Fraction
MFAgMultiple Factor Analysis (MFA)
MFHDMultivariate Functional Halfspace Depth
mFilterMiscellaneous time series filters
mfpMultivariable Fractional Polynomials
MFPCAMultivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains
MfUSamplerMultivariate-from-Univariate (MfU) MCMC Sampler
mfxMarginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
mgarchBEKKSimulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes
mgcvMixed GAM Computation Vehicle with GCV/AIC/REML Smoothness Estimation
MGGMStructural Pursuit Over Multiple Undirected Graphs
MGLModule Graphical Lasso
MGLMMultivariate Response Generalized Linear Models
mglmnModel Averaging for Multivariate GLM with Null Models
mgmEstimating Time-Varying Mixed Graphical Models
mgpdmgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
mgraphGraphing map attributes and non-map variables in R
MGRASTerAPI Client for the MG-RAST Server of the US DOE KBase
MGSDAMulti-Group Sparse Discriminant Analysis
mGSZGene set analysis based on GSZ-scoring function and asymptotic p-value
MHadaptiveGeneral Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
mhdeMinimum Hellinger Distance Test for Normality
mHGMinimum-Hypergeometric Test
mhsmmInference for Hidden Markov and Semi-Markov Models
mhtMultiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models
MHTrajectoryRBayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
mhurdleMultiple hurdle Tobit models
miMissing Data Imputation and Model Checking
miceMultivariate Imputation by Chained Equations
miceaddsSome Additional Multiple Imputation Functions, Especially for 'mice'
micEconMicroeconomic Analysis and Modelling
micEconAidsDemand Analysis with the Almost Ideal Demand System (AIDS)
micEconCESAnalysis with the Constant Elasticity of Substitution (CES) function
micEconSNQPSymmetric Normalized Quadratic Profit Function
micomprMultivariate Independent Comparison of Observations
miCoPTCMPromotion Time Cure Model with Mis-Measured Covariates
microbatsAn Implementation of Bat Algorithm in R
microbenchmarkAccurate Timing Functions
MicroDatosEsUtilities for Official Spanish Microdata
micromapLinked Micromap Plots
micromapSTLinked Micromap Plots for U. S. States
micropanMicrobial Pan-genome Analysis
microplotUse R Graphics Files as Microplots (Sparklines) in Tables in LaTeX or HTML Files, and Output Data.frames to Org-Mode
microseqBasic Biological Sequence Analysis
MicroStrategyRMicroStrategyR Package
MicSimPerforming Continuous-Time Microsimulation
midasrMixed Data Sampling Regression
midastouchMultiple Imputation by Distance Aided Donor Selection
midrangeMCPMultiple Comparisons Procedures Based on Studentized Midrange and Range Distributions
MigClimImplementing dispersal into species distribution models
migestMethods for the Indirect Estimation of Bilateral Migration
migration.indicesMigration indices
miguiGraphical User Interface to the 'mi' Package
MIICDMultiple Imputation for Interval Censored Data
MIIVsemModel Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models
MILCMIcrosimulation Lung Cancer (MILC) model
milongaMultiple Imputation for Multivariate Binary Outcome
milrMultiple-Instance Logistic Regression with LASSO Penalty
mimeMap Filenames to MIME Types
MImixMixture summary method for multiple imputation
MindOnStatsData sets included in Utts and Heckard's Mind on Statistics
minervaMaximal Information-Based Nonparametric Exploration R Package for Variable Analysis
MineyImplementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
miniCRANCreate a Mini Version of CRAN Containing Only Selected Packages
miniGUItktcl quick and simple function GUI
minimapCreate Tile Grid Maps
minimaxMinimax distribution family
minimaxdesignMinimax and Minimax Projection Designs
minimistParse Argument Options
miniUIShiny UI Widgets for Small Screens
minpack.lmR Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds
minPtestGene region-level testing procedure for SNP data, using the min P test resampling approach
minqaDerivative-free optimization algorithms by quadratic approximation
minqueAn R Package for Linear Mixed Model Analyses
MIntLearn Direct Interaction Networks
minvalMINimal VALidation for Stoichiometric Reactions
minxentEntropy Optimization Distributions
mipfpMultidimensional Iterative Proportional Fitting and Alternative Models
MIPHENOMutant Identification through Probabilistic High throughput Enabled NOrmalization
miRadaMicroRNA Microarray Data Analysis
MiRSEA'MicroRNA' Set Enrichment Analysis
mirtMultidimensional Item Response Theory
mirtCATComputerized Adaptive Testing with Multidimensional Item Response Theory
miRtestcombined miRNA- and mRNA-testing
misc3dMiscellaneous 3D Plots
miscFMiscellaneous Functions
miscFuncsMiscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools
miscsetMiscellaneous Tools Set
miscToolsMiscellaneous Tools and Utilities
miseClears the Workspace (Mise en Place)
MiSPUMicrobiome Based Sum of Powered Score (MiSPU) Tests
missDeaths'Correctly Analyse Disease Recurrence with Missing at Risk Information using Population Mortality'
missForestNonparametric Missing Value Imputation using Random Forest
MissingDataGUIA GUI for Missing Data Exploration
missMDAHandling Missing Values with Multivariate Data Analysis
MissMechTesting Homoscedasticity, Multivariate Normality, and Missing Completely at Random
MiSTMixed effects Score Test for continuous outcomes
mistatData Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti
mistralMethods in Structural Reliability Analysis
MitISEMMixture of Student t Distributions using Importance Sampling and Expectation Maximization
mitmlTools for Multiple Imputation in Multilevel Modeling
mitoolsTools for multiple imputation of missing data
mixEstimation/Multiple Imputation for Mixed Categorical and Continuous Data
mixAKMultivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering
MixAllClustering using Mixture Models
mixcatMixed effects cumulative link and logistic regression models
mixdistFinite Mixture Distribution Models
MixedDataImputeMissing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models
mixedMemTools for Discrete Multivariate Mixed Membership Models
MixedPoissonMixed Poisson Models
mixedsdeEstimation Methods for Stochastic Differential Mixed Effects Models
MixedTSMixed Tempered Stable Distribution
mixerRandom graph clustering
mixexpDesign and Analysis of Mixture Experiments
MIXFIMEvaluation of the FIM in NLMEMs using MCMC
MixGHDModel Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
mixlmMixed Model ANOVA and Statistics for Education
MixMAPImplements the MixMAP Algorithm
mixOmicsOmics Data Integration Project
mixorMixed-Effects Ordinal Regression Analysis
mixpackTools to Work with Mixture Components
mixPHMMixtures of Proportional Hazard Models
mixRaschMixture Rasch Models with JMLE
mixregFunctions to fit mixtures of regressions
MixRFA Random-Forest-Based Approach for Imputing Clustered Incomplete Data
mixsepForensic Genetics DNA Mixture Separation
MixSIARBayesian Mixing Models in R
MixSimSimulating Data to Study Performance of Clustering Algorithms
mixsmsnFitting Finite Mixture of Scale Mixture of Skew-Normal Distributions
mixtNBDE Analysis of RNA-Seq Data by Mixtures of NB
mixtoolsTools for Analyzing Finite Mixture Models
mixtoxCurve Fitting and Mixture Toxicity Assessment
mixtureMixture Models for Clustering and Classification
MixtureInfInference for Finite Mixture Models
mizerMulti-species sIZE spectrum modelling in R
mkde2D and 3D movement-based kernel density estimates (MKDEs)
mkinKinetic Evaluation of Chemical Degradation Data
MKLEMaximum kernel likelihood estimation
MKmiscMiscellaneous Functions from M. Kohl
mkssdEfficient multi-level k-circulant supersaturated designs
mlbenchMachine Learning Benchmark Problems
MLCIRTwithinLatent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality
MLCMMaximum Likelihood Conjoint Measurement
mlDNAMachine Learning-based Differential Network Analysis of Transcriptome Data
mldrExploratory Data Analysis and Manipulation of Multi-Label Data Sets
mldr.datasetsR Ultimate Multilabel Dataset Repository
MLDSMaximum Likelihood Difference Scaling
mlearningMachine learning algorithms with unified interface and confusion matrices
MLEcensComputation of the MLE for bivariate (interval) censored data
mlegpMaximum Likelihood Estimates of Gaussian Processes
mleurMaximum likelihood unit root test
mlgtMulti-Locus Geno-Typing
mlica2Independent Component Analysis using Maximum Likelihood
mlmaMultilevel Mediation Analysis
mlmcMulti-Level Monte Carlo
MLmetricsMachine Learning Evaluation Metrics
mlmmmML estimation under multivariate linear mixed models with missing values
mlmRevExamples from Multilevel Modelling Software Review
mlogitmultinomial logit model
mlogitBMABayesian Model Averaging for Multinomial Logit Models
mlPhaserMulti-Locus Haplotype Phasing
MLPUGSMulti-Label Prediction Using Gibbs Sampling (and Classifier Chains)
mlrMachine Learning in R
MLRMPAA package for Multilinear Regression Model Population Analysis
mlsjunkgenUse the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers
mltMost Likely Transformations
mlt.docregMost Likely Transformations: Documentation and Regression Tests
mlVARMulti-Level Vector Autoregression
mlxRSimulation of Longitudinal Data
MMThe multiplicative multinomial distribution
MM2SSingle-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
MM2SdataGene Expression Datasets for the 'MM2S' Package
mmaMultiple Mediation Analysis
mmandMathematical Morphology in Any Number of Dimensions
mmapMap Pages of Memory
mmcMultivariate Measurement Error Correction
mmcmModified Maximum Contrast Method
mmdsMixture Model Distance Sampling (mmds)
mmeMultinomial Mixed Effects Models
mmelnEstimation of Multinormal Mixture Distribution
mmetaMultivariate Meta-Analysis
mmman R package for analyzing multivariate longitudinal data with multivariate marginal models
mmm2Multivariate marginal models with shared regression parameters
MMMSMulti-Marker Molecular Signature for Treatment-specific Subgroup Identification
mmodModern Measures of Population Differentiation
mmppVarious Similarity and Distance Metrics for Marked Point Processes
mmpprMarkov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts
MMSFixed effects Selection in Linear Mixed Models
mmtfaModel-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers
MMWRweekConvert Dates to MMWR Day, Week, and Year
mnlogitMultinomial Logit Model
MNMMultivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
mnormpowMultivariate Normal Distributions with Power Integrand
mnormtThe Multivariate Normal and t Distributions
MNPR Package for Fitting the Multinomial Probit Model
MNSMixed Neighbourhood Selection
MobilizeMobilize plots and functions
MOCCAMulti-objective optimization for collecting cluster alternatives
mod09nrtExtraction of Bands from MODIS Surface Reflectance Product MOD09 NRT
ModalclustHierarchical Modal Clustering
modeestMode Estimation
modehuntMultiscale Analysis for Density Functions
modelfreeModel-free estimation of a psychometric function
ModelGoodValidation of risk prediction models
modellingToolsA Collection of Useful Custom Tools for D&A and Modelling
ModelMapModeling and Map Production using Random Forest and Stochastic Gradient Boosting
modelObjA Model Object Framework for Regression Analysis
modeltoolsTools and Classes for Statistical Models
modesFind the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets
modEvAModel Evaluation and Analysis
modiscloudR tools for processing Level 2 Cloud Mask products from MODIS
MODISToolsMODIS Subsetting Tools
modMaxCommunity Structure Detection via Modularity Maximization
modQRMultiple-Output Directional Quantile Regression
modTempEffModelling temperature effects using time series data
moduleColorBasic Module Functions
modulesSelf Contained Units of Source Code
modyglianiMOlecular DYnamics GLobal ANalysis
mogavsMultiobjective Genetic Algorithm for Variable Selection in Regression
MOJOVMojo Variants: Rare Variants analysis
mokkenPerform Mokken Scale Analysis in R
molaRDental Surface Complexity Measurement Tools
mombfMoment and Inverse Moment Bayes Factors
momentchi2Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables
momentsMoments, cumulants, skewness, kurtosis and related tests
MomocsMorphometrics using R
momrMining Metaomics Data (MetaOMineR)
mondateKeep track of dates in terms of months
MondrianA Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events
MonetDBLiteIn-Process Version of MonetDB for R
MonetDB.RConnect MonetDB to R
mongoliteFast and Simple MongoDB Client for R
monitoRAcoustic Template Detection in R
monmlpMonotone Multi-Layer Perceptron Neural Network
monogeneaGMGeometric Morphometric Analysis of Monogenean Anchors
monographaRTaxonomic Monographs Tools
MonoIncMonotonic Increasing
monomvnEstimation for Multivariate Normal and Student-t Data with Monotone Missingness
MonoPhyAllows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny
MonoPolyFunctions to Fit Monotone Polynomials
monregNonparametric Monotone Regression
moonBookFunctions and Datasets for the Book by Keon-Woong Moon
moonsunBasic astronomical calculations with R
mopsocdMOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance
MOrderCheck Time Homogeneity and Markov Chain Order
morgenstemningColor schemes compatible with red-green color perception difficulties
MorphoCalculations and Visualisations Related to Geometric Morphometrics
morseMOdelling Tools for Reproduction and Survival Data in Ecotoxicology
MorseGenSimple raw data generator based on user-specified summary statistics
MortalitySmoothSmoothing and Forecasting Poisson Counts with P-Splines
mosaicProject MOSAIC Statistics and Mathematics Teaching Utilities
mosaicDataProject MOSAIC Data Sets
MoTBFsLearning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions
MotilityLabQuantitative Analysis of Motion
moultModels for Analysing Moult in Birds
mountainplotMountain Plots, Folded Empirical Cumulative Distribution Plots
mousetrackMouse-Tracking Measures from Trajectory Data
mousetrapProcess and Analyze Mouse-Tracking Data
moveVisualizing and Analyzing Animal Track Data
moveHMMAnimal Movement Modelling using Hidden Markov Models
movMFMixtures of von Mises-Fisher Distributions
mpMultidimensional Projection Techniques
mpaCoWords Method
MPAgenomicsMulti-Patient Analysis of Genomic Markers
mpathRegularized Linear Models
mpbartMultinomial Probit Bayesian Additive Regression Trees
MPCIMultivariate Process Capability Indices (MPCI)
mpcvMultivariate Process Capability Vector
MPDiRData sets and scripts for Modeling Psychophysical Data in R
mphMultiscale persistent homology
MPINetThe package can implement the network-based metabolite pathway identification of pathways
MPLikelihoodWBModified Profile Likelihood Estimation for Weibull Shape and Regression Parameters
mplotGraphical Model Stability and Variable Selection Procedures
MplusAutomationAutomating Mplus Model Estimation and Interpretation
mpmMultivariate Projection Methods
mpMapMulti-parent RIL genetic analysis
mpmcorrelogramMultivariate Partial Mantel Correlogram
mpmiMixed-pair mutual information estimators
mpolySymbolic Computation and More with Multivariate Polynomials
MposteriorMposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures
mppaStatistics for analysing multiple simultaneous point processes on the real line
MPSEMModeling Phylogenetic Signals using Eigenvector Maps
mptMultinomial Processing Tree Models
MPTinRAnalyze Multinomial Processing Tree Models
mptoolsRAMAS Metapop Tools
MPVData Sets from Montgomery, Peck and Vining's Book
mQTLMetabolomic Quantitative Trait Locus Mapping
mraAnalysis of Mark-Recapture Data
mratiosInferences for ratios of coefficients in the general linear model
MRCEMultivariate regression with covariance estimation
MRCVMethods for Analyzing Multiple Response Categorical Variables (MRCVs)
mrdsMark-Recapture Distance Sampling
mregFits regression models when the outcome is partially missing
MRHMulti-Resolution Estimation of the Hazard Rate
mriModified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2)
mritcMRI Tissue Classification
mRmAn R package for conditional maximum likelihood estimation in mixed Rasch models
mrMLMMultilocus Random Mixed Linear Model for Genome-Wide Association Study and Linkage Analysis
MRMRMultivariate Regression Models for Reserving
mRMReR package for parallelized mRMR ensemble feature selection
MRQoLMinimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life
MRSMulti-Resolution Scanning for Cross-Sample Differences
MRSPMultinomial Response Models with Structured Penalties
MRsurvA multiplicative-regression model for relative survival
MRwarpingMultiresolution time warping for functional data
msapStatistical analysis for Methylation-sensitive Amplification Polymorphism data
msarcDraw Diagrams (mis)Representing the Results of Mass Spec Experiments
msBPMultiscale Bernstein Polynomials for Densities
MSBVARMarkov-Switching, Bayesian, Vector Autoregression Models
MSCMTMultivariate Synthetic Control Method Using Time Series
MScombineCombine Data from Positive and Negative Ionization Mode Finding Common Entities
mscstexta4rR Client for the Microsoft Cognitive Services Text Analytics REST API
mscsweblm4rR Client for the Microsoft Cognitive Services Web Language Model REST API
msdaMulti-Class Sparse Discriminant Analysis
mseapcaMetabolite set enrichment analysis for factor loading in principal component analysis
MSeasyPreprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
MSeasyTkGUIMSeasy Tcl/Tk Graphical User Interface
MSGData and Functions for the Book Modern Statistical Graphics
msglHigh Dimensional Multiclass Classification Using Sparse Group Lasso
msgpackRA library to serialize or unserialize data in MessagePack format
msgpsDegrees of freedom of elastic net, adaptive lasso and generalized elastic net
msirModel-Based Sliced Inverse Regression
MSIseqAssess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
msltrendImproved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records
msmMulti-State Markov and Hidden Markov Models in Continuous Time
msmaMultiblock Sparse Multivariable Analysis
msmeFunctions and Datasets for "Methods of Statistical Model Estimation"
msmtoolsBuilding Augmented Data to Run Multi-State Models with 'msm' Package
msosDatasets and Functions used in Multivariate Statistics: Old School by John Marden
MSQCMultivariate Statistical Quality Control
msrMorse-Smale Approximation, Regression and Visualization
ms.sevPackage for Calculation of ARMSS, Local MSSS and Global MSSS
msSurvNonparametric Estimation for Multistate Models
MSTMultivariate Survival Trees
mstateData Preparation, Estimation and Prediction in Multi-State Models
MSwMFitting Markov Switching Models
mtconnectRRead Data from Delimited 'MTConnect' Data Files and Perform some Analysis
mtkMexico ToolKit library (MTK)
MTSAll-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models
mtsdiMultivariate time series data imputation
MTurkRR Client for the MTurk Requester API
MTurkRGUIA Graphical User Interface for MTurkR
MUCflightsMunich Franz-Josef-Strauss Airport Pattern Analysis
muckrockData on Freedom of Information Act Requests
MuFiCokrigingMulti-Fidelity Cokriging models
muhazHazard Function Estimation in Survival Analysis
muirExploring Data with Tree Data Structures
MultAllocOptimal Allocation in Stratified Sampling
multcompSimultaneous Inference in General Parametric Models
multcompViewVisualizations of Paired Comparisons
MultEqMultiple Equivalence Tests and Simultaneous Confidence Intervals
multgeeGEE Solver for Correlated Nominal or Ordinal Multinomial Responses
multiAssetOptionsFinite Difference Method for Multi-Asset Option Valuation
multibandPeriod Estimation for Multiple Bands
multibiplotGUIMultibiplot Analysis in R
multicQuantitative Linkage Analysis Tools using the Variance Components Approach
MultiCNVDetectMultiple Copy Number Variation Detection
multiconMultivariate Constructs
multicoolPermutations of Multisets in Cool-Lex Order
multiDimBioMultivariate Analysis and Visualization for Biological Data
multifwfRead Fixed Width Format Files Containing Lines of Different Type
multigroupMultigroup Data Analysis
MultiLCIRTMultidimensional Latent Class Item Response Theory Models
multilevelMultilevel Functions
multilevelPSAMultilevel Propensity Score Analysis
multimarkCapture-Mark-Recapture Analysis using Multiple Non-Invasive Marks
MultiMetaMeta-analysis of Multivariate Genome Wide Association Studies
multinbmodRegression analysis of overdispersed correlated count data
MultinomialCISimultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
multinomRobRobust Estimation of Overdispersed Multinomial Regression Models
MultiOrdGeneration of Multivariate Ordinal Variates
multipanelfigureInfrastructure to Assemble Multi-Panel Figures (from Grobs)
MultiPhenA Package to Test for Pleiotropic Effects
multiPIMVariable Importance Analysis with Population Intervention Models
multipleNCCWeighted Cox-Regression for Nested Case-Control Data
multiplexAlgebraic Tools for the Analysis of Multiple Social Networks
multiplyrData Manipulation with Parallelism and Shared Memory Matrices
multipolmultivariate polynomials
multirichCalculate Multivariate Richness via UTC and sUTC
MultiRRBias, Precision, and Power for Multi-Level Random Regressions
multisensiMultivariate Sensitivity Analysis
multisomClustering a Dataset using Multi-SOM Algorithm
multispatialCCMMultispatial Convergent Cross Mapping
MultiSVMultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
multitaperMultitaper Spectral Analysis Tools
MultivariateRandomForestMultivariate Random Forest for Linearly Related Output Features
multivatorA multivariate emulator
multiwaveEstimation of Multivariate Long-Memory Models Parameters
multiwayComponent Models for Multi-Way Data
multiwayvcovMulti-Way Standard Error Clustering
MultNonParamMultivariate Nonparametric Methods
multxpertCommon Multiple Testing Procedures and Gatekeeping Procedures
mumaMetabolomics Univariate and Multivariate Analysis
MuMInMulti-Model Inference
munfoldMetric Unfolding
munsellUtilities for Using Munsell Colours
munsellinterpolInterpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
muRLMailmerge using R, LaTeX, and the Web
murphydiagramMurphy Diagrams for Forecast Comparisons
musicNMRConversion of Nuclear Magnetic Resonance spectrum in audio file
muStatPrentice Rank Sum Test and McNemar Test
mutossUnified Multiple Testing Procedures
mutossGUIA Graphical User Interface for the MuToss Project
MuViCPMultiClass Visualizable Classification using Combination of Projections
MVAAn Introduction to Applied Multivariate Analysis with R
mvabundStatistical Methods for Analysing Multivariate Abundance Data
MVar.ptAnalise multivariada (brazilian portuguese)
MVBMutivariate Bernoulli log-linear model
MvBinaryModelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
mvbutilsWorkspace organization, code and documentation editing, package prep and editing, etc
mvcMulti-View Clustering
mvclusterMulti-View Clustering
mvctmMultivariate Variance Components Tests for Multilevel Data
mvcwtWavelet analysis of multiple time series
mvdalabMultivariate Data Analysis Laboratory
mvglmmRankMultivariate Generalized Linear Mixed Models for Ranking Sports Teams
mvinfluenceInfluence Measures and Diagnostic Plots for Multivariate Linear Models
MVLMMultivariate Linear Model with Analytic p-Values
mvmeshMultivariate Meshes and Histograms in Arbitrary Dimensions
mvmetaMultivariate and Univariate Meta-Analysis and Meta-Regression
mvMORPHMultivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
MVNMultivariate Normality Tests
mvnaNelson-Aalen estimator of the cumulative hazard in multistate models
mvnfastFast Multivariate Normal Methods
mvngGrAdMoving Grid Adjustment in Plant Breeding Field Trials
mvnmleML estimation for multivariate normal data with missing values
mvnormtestNormality test for multivariate variables
mvnpermuteGenerate New Multivariate Normal Samples from Permutations
mvnTestGoodness of Fit Tests for Multivariate Normality
mvoutlierMultivariate outlier detection based on robust methods
mvPotMultivariate Peaks-over-Threshold Modelling for Spatial Extreme Events
mvProbitMultivariate Probit Models
mvprpbOrthant Probability of the Multivariate Normal Distribution
mvQuadMethods for Multivariate Quadrature
MVRMean-Variance Regularization
mvrtnMean and Variance of Truncated Normal Distribution
mvsfShapiro-Francia Multivariate Normality Test
mvShapiroTestGeneralized Shapiro-Wilk test for multivariate normality
mvSLOUCHMultivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
mvstBayesian Inference for the Multivariate Skew-t Model
MVTEstimation and Testing for the Multivariate t-Distribution
mvtboostTree Boosting for Multivariate Outcomes
mvtmetaMultivariate meta-analysis
mvtnormMultivariate Normal and t Distributions
mvtsplotMultivariate Time Series Plot
mwaCausal Inference in Spatiotemporal Event Data
mwavedMultichannel Wavelet Deconvolution with Additive Long Memory Noise
mxkssdEfficient mixed-level k-circulant supersaturated designs
MXMDiscovering Multiple, Statistically-Equivalent Signatures
mycobacrvRIntegrative immunoinformatics for Mycobacterial diseases in R platform
mycorAutomatic Correlation and Regression Test in a Data Frame
myepisodesMyEpisodes RSS/API functions
MyrrixInterface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout
MyrrixjarsExternal jars required for package Myrrix
myTAIPerform Evolutionary Transcriptomics Studies
mztwinregRegression Models for Monozygotic Twin Data
naborWraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions
NADANondetects And Data Analysis for environmental data
nadiv(Non)Additive Genetic Relatedness Matrices
NAEPprimerThe NAEP Primer
NAMNested Association Mapping Analysis
namespaceProvide namespace managment functions not (yet) present in base R
nanopTools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function
NanoStringNormNormalize NanoString miRNA and mRNA Data
NAPPAPerforms the Processing and Normalisation of Nanostring miRNA and mRNA Data
nasadataInterface to Various NASA API's
nasaweatherCollection of datasets from the ASA 2006 data expo
natNeuroAnatomy Toolbox for Analysis of 3D Image Data
nat.nblastNeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
nat.templatebrainsNeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
naturalsortNatural Ordering
nat.utilsFile System Utility Functions for 'NeuroAnatomy Toolbox'
NBMaximum Likelihood method in estimating effective population size from genetic data
nbc4vaBayes Classifier for Verbal Autopsy Data
NbClustDetermining the Best Number of Clusters in a Data Set
nbconvertRVignette Engine Wrapping IPython Notebooks
NBDdirichletNBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research
nbpMatchingFunctions for Optimal Non-Bipartite Matching
NBPSeqNegative Binomial Models for RNA-Sequencing Data
NCANecessary Condition Analysis
nCalNonlinear Calibration
ncappcNCA Calculation and Population PK Model Diagnosis
ncbitretrieve and build NBCI taxonomic data
ncdf4Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
ncdf4.helpersHelper functions for use with the ncdf4 package
ncdf.toolsEasier 'NetCDF' File Handling
nCDunnettNoncentral Dunnett's Test Distribution
ncfSpatial Nonparametric Covariance Functions
ncgComputes the noncentral gamma function
NCmiscMiscellaneous Functions for Creating Adaptive Functions and Scripts
ncvregRegularization Paths for SCAD and MCP Penalized Regression Models
ndlNaive Discriminative Learning
ndtvNetwork Dynamic Temporal Visualizations
NEArenderNetwork Enrichment Analysis
nearisoNear-Isotonic Regression
neatEfficient Network Enrichment Analysis Test
NeatMapNon-clustered heatmap alternatives
needsAttaches and Installs Packages
NEffCalculating Effective Sizes Based on Known Demographic Parameters of a Population
negenesEstimating the Number of Essential Genes in a Genome
neldermeadR port of the Scilab neldermead module
neotomaAccess to the Neotoma Paleoecological Database Through R
nephroBiostatistics Utilities for Nephrology
NEpiCNetwork Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals
NestedCohortSurvival Analysis for Cohorts with Missing Covariate Information
nestedRanksTestMann-Whitney-Wilcoxon Test for Nested Ranks
netassocInference of Species Associations from Co-Occurrence Data
netClassnetClass: An R Package for Network-Based Biomarker Discovery
NetClusterClustering for networks
netcohStatistical Modeling with Network Cohesion
NetCompNetwork Generation and Comparison
NetDataNetwork Data for McFarland's SNA R labs
netdiffuseRNetwork Analysis for Diffusion of Innovations
netgenNetwork Generator for Combinatorial Graph Problems
netgsaNetwork-Based Gene Set Analysis
NetIndicesEstimating network indices, including trophic structure of foodwebs in R
netmetaNetwork Meta-Analysis using Frequentist Methods
NetOriginOrigin Estimation for Propagation Processes on Complex Networks
NetPreProcNetwork Pre-Processing and Normalization
netsNetwork Estimation for Time Series
NetSimA Social Networks Simulation Tool in R
NetSwanNetwork Strengths and Weaknesses Analysis
nettoolsA Network Comparison Framework
networkClasses for Relational Data
networkD3D3 JavaScript Network Graphs from R
networkDynamicDynamic Extensions for Network Objects
networkDynamicDataDynamic (Longitudinal) Network Datasets
networkreportingTools for using Network Reporting Estimators
networksisSimulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling
networkTomographyTools for network tomography
neuralNeural Networks
neuralnetTraining of neural networks
NeuralNetToolsVisualization and Analysis Tools for Neural Networks
neuroblastomaNeuroblastoma copy number profiles
neuroimData Structures and Handling for Neuroimaging Data
neuRosimFunctions to Generate fMRI Data Including Activated Data, Noise Data and Resting State Data
NewdistnsComputes Pdf, Cdf, Quantile and Random Numbers, Measures of Inference for 19 General Families of Distributions
nFactorsParallel Analysis and Non Graphical Solutions to the Cattell Scree Test
nFCANumerical Formal Concept Analysis for Systematic Clustering
ngramFast n-Gram 'Tokenization'
ngramrrA Simple General Purpose N-Gram Tokenizer
ngspatialFitting the centered autologistic and sparse spatial generalized linear mixed models for areal data
NHANESData from the US National Health and Nutrition Examination Study
nhanesANHANES Data Retrieval
NHEMOtreeNon-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification
nhlscraprCompiling the NHL Real Time Scoring System Database for easy use in R
NHMMBayesian NHMM Modeling (Multiple Time Series)
NHMSARNon-Homogeneous Markov Switching Autoregressive Models
NHPoissonModelling and Validation of Non Homogeneous Poisson Processes
niceGet or Set UNIX Niceness
nicheROVER(Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches
NightDayNight and Day Boundary Plot Funtion
nimaNima Hejazi's Miscellaneous R Code
NipponJapanese Utility Functions and Data
NIPTeRFast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing
NISTnlsNonlinear least squares examples from NIST
NISTunitsFundamental Physical Constants and Unit Conversions from NIST
nivmNoninferiority Tests with Variable Margins
NlcOptimSolve Nonlinear Optimization with Nonlinear Constraints
nleqslvSolve Systems of Nonlinear Equations
nlmeLinear and Nonlinear Mixed Effects Models
nlmeODENon-linear mixed-effects modelling in nlme using differential equations
nlmeUDatasets and utility functions enhancing functionality of nlme package
nlmrtFunctions for Nonlinear Least Squares Solutions
nlnetNonlinear Network Reconstruction and Clustering Based on DCOL (Distance Based on Conditional Ordered List)
nloptrR interface to NLopt
NLPNatural Language Processing Infrastructure
NLPutilsNatural Language Processing Utilities
nlregHigher Order Inference for Nonlinear Heteroscedastic Models
NLRootsearching for the root of equation
nlrrNon-Linear Relative Risk Estimation and Plotting
nls2Non-linear regression with brute force
nlsemFitting Structural Equation Mixture Models
nlshrinkNon-Linear Shrinkage Estimation of Population Eigenvalues and Covariance Matrices
nlsMicrobioNonlinear regression in predictive microbiology
nlsmsnFitting nonlinear models with scale mixture of skew-normal distributions
nlstoolsTools for Nonlinear Regression Analysis
NlsyLinksUtilities and Kinship Information for Research with the NLSY
nltA nondecimated lifting transform for signal denoising
nlts(non)linear time series analysis
nLTTCalculate the 'nLTT' Statistic
nlWaldTestWald Test of Nonlinear Restrictions and Nonlinear CI
nmcdrNon-parametric Multiple Change-points Detection
NMFAlgorithms and Framework for Nonnegative Matrix Factorization (NMF)
nmfgpu4RNon-Negative Matrix Factorization (NMF) using CUDA
NMFNNon-negative Matrix Factorization
NMOFNumerical Methods and Optimization in Finance
nnetFeed-Forward Neural Networks and Multinomial Log-Linear Models
nnetpredintPrediction Intervals of Multi-Layer Neural Networks
nnlassoNon-Negative Lasso and Elastic Net Penalized Generalized Linear Models
NNLMFast and Versatile Non-Negative Matrix Factorization
nnlsThe Lawson-Hanson algorithm for non-negative least squares (NNLS)
NNSNonlinear Nonparametric Statistics
NNTbiomarkerCalculate Design Parameters for Biomarker Validation Studies
nodeHarvestNode Harvest for Regression and Classification
nodivCompares the Distribution of Sister Clades Through a Phylogeny
noiaImplementation of the Natural and Orthogonal InterAction (NOIA) model
NoiseFiltersRLabel Noise Filters for Data Preprocessing in Classification
nomadlistInterface to the Nomad List API
nomclustHierarchical Nominal Clustering Package
NominalLogisticBiplotBiplot representations of categorical data
noncensusU.S. Census Regional and Demographic Data
noncomplianceCausal Inference in the Presence of Treatment Noncompliance Under the Binary Instrumental Variable Model
nonlinearTseriesNonlinear Time Series Analysis
nonmem2RLoading NONMEM Output Files and Simulate with Parameter Uncertainty
nonnest2Tests of Non-Nested Models
nonparaeffNonparametric Methods for Measuring Efficiency and Productivity
NonpModelCheckModel Checking and Variable Selection in Nonparametric Regression
nonrandomStratification and matching by the propensity score
nontargetDetecting Isotope, Adduct and Homologue Relations in LC-MS Data
nontargetDataQuantized simulation data of isotope pattern centroids
noppNash Optimal Party Positions
nor1mixNormal (1-d) Mixture Models (S3 Classes and Methods)
nordklimdata1Dataset for Climate Analysis with Data from the Nordic Region
normAnalysis of multivariate normal datasets with missing values
norm2Analysis of Incomplete Multivariate Data under a Normal Model
NormalGammaNormal-gamma convolution model
NormalLaplaceThe Normal Laplace Distribution
normalpRoutines for Exponential Power Distribution
NormPsyNormalisation of Psychometric Tests
NORMT3Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t
normtestTests for Normality
normwhn.testNormality and White Noise Testing
NORRRMGeochemical Toolkit for R
NORTARAGeneration of Multivariate Data with Arbitrary Marginals
nortestTests for Normality
nortestARMANeyman Smooth Tests of Normality for the Errors of ARMA Models
nosenose Package for R
NostalgiRAdvanced Text-Based Plots
notifyRSend push notifications to your smartphone via (ACCOUNT REQUIRED!)
novelistNOVEL Integration of the Sample and Thresholded (NOVELIST) Correlation and Covariance Estimators
nowebNoweb system for R
Nozzle.R1Nozzle Reports
npNonparametric kernel smoothing methods for mixed data types
nparACTNon-Parametric Measures of Actigraphy Data
nparcompMultiple Comparisons and Simultaneous Confidence Intervals
nparLDNonparametric Analysis of Longitudinal Data in Factorial Experiments
NPBayesImputeNon-Parametric Bayesian Multiple Imputation for Categorical Data
npbrNonparametric Boundary Regression
NPCNonparametric Combination of Hypothesis Tests
NPCDNonparametric Methods for Cognitive Diagnosis
NPCircNonparametric Circular Methods
npcpSome Nonparametric Tests for Change-Point Detection in Possibly Multivariate Observations
npdeNormalised prediction distribution errors for nonlinear mixed-effect models
NPflowBayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
NPHMCSample Size Calculation for the Proportional Hazards Mixture Cure Model
npIntFactRepNonparametric Interaction Tests for Factorial Designs with Repeated Measures
nplplotPlotting linkage and association results
nplrN-Parameter Logistic Regression
NPMLEcmprskType-Specific Failure Rate and Hazard Rate on Competing Risks Data
npmlregNonparametric maximum likelihood estimation for random effect models
NPMPMtertiary probabilistic model in predictive microbiology for use in food manufacture
npmrNuclear Penalized Multinomial Regression
npmvNonparametric Comparison of Multivariate Samples
NPMVCPNonparametric Multivariate Change Point Model
nppbibNonparametric Partially-Balanced Incomplete Block Design Analysis
npregfastNonparametric Estimation of Regression Models with Factor-by-Curve Interactions
nprocNeyman-Pearson Receiver Operator Curve
npROCRegressionKernel-Based Nonparametric ROC Regression Modelling
NPSConvenience Functions and Tests for Working With the Net Promoter Score (NPS)
npsfNonparametric and Stochastic Efficiency and Productivity Analysis
NPsimexNonparametric Smoothing for contaminated data using Simulation-Extrapolation
npsmPackage for Nonparametric Statistical Methods using R
npspNonparametric spatial (geo)statistics
npstGeneralization of Hewitt's Seasonality Test
npsurvNon-Parametric Survival Analysis
NSAPost-normalization of total copy numbers
nscancorNon-Negative and Sparse CCA
NSclusterSimulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
nsga2RElitist Non-dominated Sorting Genetic Algorithm based on R
nsgpNon-Stationary Gaussian Process Regression
NSM3Functions and Datasets to Accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition
nsprcompNon-Negative and Sparse PCA
nsRFANon-supervised Regional Frequency Analysis
NSUMNetwork Scale Up Method
NUCOMBogNUtrient Cycling and COMpetition Model Undisturbed Open Bog Ecosystems in a Temperate to Sub-Boreal Climate
nullaborTools for Graphical Inference
numbersNumber-Theoretic Functions
numDerivAccurate Numerical Derivatives
numOSLNumeric Routines for Optically Stimulated Luminescence Dating
nutshellData for "R in a Nutshell"
nutshell.audioscrobblerAudioscrobbler data for "R in a Nutshell"
nutshell.bbdbBaseball Database for "R in a Nutshell"
nwsR functions for NetWorkSpaces and Sleigh
nycflights13Flights that Departed NYC in 2013
nzelectNew Zealand Election Results
oaColorsOpenAnalytics Colors Package
oaiGeneral Purpose 'Oai-PMH' Services Client
OAIHarvesterHarvest Metadata Using OAI-PMH v2.0
oapackageOrthogonal Array Package
oaPlotsOpenAnalytics Plots Package
OarrayArrays with arbitrary offsets
oasisMultiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI)
OasisROutright Tool for the Analysis of Spatial Inequalities and Segregation
oaxacaBlinder-Oaxaca Decomposition
obAnalyticsLimit Order Book Analytics
objectPropertiesA factory of self-describing properties
obliclusCluster-based factor rotation
obliqueRFOblique Random Forests from Recursive Linear Model Splits
oblique.treeOblique Trees for Classification Data
obs.agreeAn R package to assess agreement between observers
OBsMDObjective Bayesian Model Discrimination in Follow-Up Designs
obsSensSensitivity analysis for Observational studies
ocOC Roll Call Analysis Software
occEstimates PET neuroreceptor occupancies
oceAnalysis of Oceanographic Data
oceanBiophysical Oceanography Tools
OceanViewVisualisation of Oceanographic Data and Model Output
ocedataOceanographic Datasets for Oce
ocompositionRegression for Rank-Indexed Compositional Data
ODataR Helper for OData Web Services
ODBOpen Document Databases (.odb) management
odds.converterBetting Odds Conversion
odeintrC++ ODE Solvers Compiled on-Demand
odfWeaveSweave processing of Open Document Format (ODF) files
odfWeave.surveySupport for odfWeave on the survey package
ODMconverterTools to Convert ODM Files
oecThe Observatory of Economic Complexity
OECDSearch and Extract Data from the OECD
oemOrthogonalizing Expectation maximization
oglmxEstimation of Ordered Generalized Linear Models
OhmageR Client for Ohmage 2 server
OIdataData sets and supplements (OpenIntro)
OIsurvSurvival analysis supplement to OpenIntro guide
OjaNPMultivariate Methods Based on the Oja Median and Related Concepts
okmesonetRetrieve Oklahoma Mesonet climatological data
olctoolsOpen Location Code Handling in R
OligoSpecificitySystemOligo Specificity System
OLScurveOLS growth curve trajectories
omdfilter the molecular descriptors for QSAR
OmicKrigingPoly-Omic Prediction of Complex TRaits
omics'–omics' Data Analysis Toolbox
oncomodelMaximum likelihood tree models for oncogenesis
OncotreeEstimating oncogenetic trees
OneArmPhaseTwoStudyPlaning, Monitoring and Evaluating Oncological Phase 2 Studies
onemapSoftware for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
OneROne Rule Machine Learning Classification Algorithm with Enhancements
ONETrEfficient Authenticated Interaction with the O*NET API
OneTwoSamplesDeal with one and two (normal) samples
onewaytestsOne-Way Independent Groups Design
onionoctonions and quaternions
onlinePCAOnline Principal Component Analysis
onlsOrthogonal Nonlinear Least-Squares Regression
ontologyIndexFunctions for Reading Ontologies into R
ontologyPlotFunctions for Visualising Sets of Ontological Terms
ontologySimilarityFunctions for Calculating Ontological Similarities
OOmiscOzgur-Ozlem Miscellaneous
OpasnetUtilsOpasnet Modelling Environment Utility Functions
OPDOEOPtimal Design Of Experiments
opefimorOption Pricing and Estimation of Financial Models in R
openairTools for the Analysis of Air Pollution Data
opencageInterface to the OpenCage API
OpenCLInterface allowing R to use OpenCL
opencpuEmbedded Scientific Computing and Reproducible Research with R
OpenImageRAn Image Processing Toolkit
openintroOpenIntro data sets and supplemental functions
OpenMPControllerControl number of OpenMP threads dynamically
OpenMxExtended Structural Equation Modelling
openNLPApache OpenNLP Tools Interface
openNLPdataApache OpenNLP Jars and Basic English Language Models
OpenRepGridTools to analyse repertory grid data
opensslToolkit for Encryption, Signatures and Certificates Based on OpenSSL
OpenStreetMapAccess to Open Street Map Raster Images
opentrajTools for Creating and Analysing Air Trajectory Data
openVAAutomated Method for Verbal Autopsy
openxlsxRead, Write and Edit XLSX Files
operatorsAdditional Binary Operators
operator.toolsUtilities for Working with R's Operators
OPIOpen Perimetry Interface
opsOptimal Power Space Transformation
optAUCOptimal Combinations of Diagnostic Tests Based on AUC
optBiomarkerEstimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
optClusterDetermine Optimal Clustering Algorithm and Number of Clusters
optDesignSlopeIntOptimal Designs for Estimating the Slope Divided by the Intercept
optextrasTools to Support Optimization Methods
OptGSNear-Optimal and Balanced Group-Sequential Designs for Clinical Trials with Continuous Outcomes
OptHedgingEstimation of value and hedging strategy of call and put options
optifunsetSet Options if Unset
optigrabCommand-Line Parsing for an R World
OptimalCutpointsComputing optimal cutpoints in diagnostic tests
OptimaRegionConfidence Regions for Optima
optimbaseR port of the Scilab optimbase module
optimsimplexR port of the Scilab optimsimplex module
optimxA Replacement and Extension of the optim() Function
OptInterimOptimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint
OptionPricingOption Pricing with Efficient Simulation Algorithms
OptiQuantRSimplifies and Automates Analyzing and Reporting OptiQuant's log Data
optiRumFinancial Functions & More
optiscaleOptimal scaling
optiSelOptimum Contribution Selection and Pedigree Analysis
optismixtureOptimal Mixture Weights in Multiple Importance Sampling
optmatchFunctions for Optimal Matching
optparseCommand Line Option Parser
optpartOptimal Partitioning of Similarity Relations
optROptimization Toolbox for solving linear systems
optreesOptimal Trees in Weighted Graphs
oraConvenient Tools for Working with Oracle Databases
orcaComputation of Graphlet Orbit Counts in Sparse Graphs
ORCISeveral confidence intervals for the odds ratio
orclusORCLUS subspace clustering
ORCMEOrder Restricted Clustering for Microarray Experiments
orcuttEstimate procedure in case of first order autocorrelation
ordBTLModelling comparison data with ordinal response
orddomOrdinal Dominance Statistics
ORDER2PARENTEstimate parent distributions with data of several order statistics
orderbookOrderbook visualization/Charting software
orderedLassoOrdered Lasso and Time-lag Sparse Regression
OrdFacRegLeast Squares, Logistic, and Cox-Regression with Ordered Predictors
ordiBreadthOrdinated Diet Breadth
ordinalRegression Models for Ordinal Data
ordinalContOrdinal Regression Analysis for Continuous Scales
ordinalgmifsOrdinal Regression for High-dimensional Data
OrdinalLogisticBiplotBiplot representations of ordinal variables
ordinalNetPenalized Ordinal Regression
OrdLogRegOrdinal Logic Regression
OrdMonRegCompute least squares estimates of one bounded or two ordered isotonic regression curves
OrdNorConcurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions
ordPensSelection and/or Smoothing of Ordinal Predictors
oreAn R Interface to the Oniguruma Regular Expression Library
oresConnector to the Objective Revision Evaluation Service (ORES)
OrgMassSpecROrganic Mass Spectrometry
orgRAnalyse Text Files Created by Emacs' Org mode
ORIClustOrder-restricted Information Criterion-based Clustering Algorithm
orientlibSupport for orientation data
OriGenFast Spatial Ancestry via Flexible Allele Frequency Surfaces
originrFetch Species Origin Data from the Web
orlocaThe package deals with Operations Research LOCational Analysis models
orloca.esSpanish version of orloca package
oro.dicomRigorous - DICOM Input / Output
oro.niftiRigorous - NIfTI + ANALYZE + AFNI : Input / Output
oro.petRigorous - Positron Emission Tomography
orQAOrder Restricted Assessment Of Microarray Titration Experiments
orsifrontsSouthern Ocean Frontal Distributions (Orsi)
orskConverting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information
orthogonalsplinebasisOrthogonal B-Spline Basis Functions
OrthoPanelsDynamic Panel Models with Orthogonal Reparameterization of Fixed Effects
orthopolynomCollection of functions for orthogonal and orthonormal polynomials
oscOrthodromic Spatial Clustering
osdOrthogonal Signal Deconvolution for Spectra Deconvolution in GC-MS and GCxGC-MS Data
osDesignDesign and analysis of observational studies
osiOpen Source Initiative API Connector
osmarOpenStreetMap and R
osmplotrCustomisable Images of OpenStreetMap Data
osrmInterface Between R and the OpenStreetMap-Based Routing Service OSRM
OTEOptimal Trees Ensembles for Regression, Classification and Class Membership Probability Estimation
OTRselectVariable Selection for Optimal Treatment Decision
OTUtableNorth Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
ouchOrnstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
outbreakerBayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
OutbreakToolsBasic Tools for the Analysis of Disease Outbreaks
OutlierDCOutlier Detection using quantile regression for Censored Data
OutlierDMOutlier Detection for Multi-replicated High-throughput Data
outliersTests for outliers
OutrankingToolsFunctions for Solving Multiple-criteria Decision-making Problems
OUwieAnalysis of Evolutionary Rates in an OU Framework
overlapEstimates of Coefficient of Overlapping for Animal Activity Patterns
overlappingEstimation of Overlapping in Empirical Distributions
OxyBSProcessing of Oxy-Bisulfite Microarray Data
ozPlot the Australian Coastline and States
P2C2MPosterior Predictive Checks of Coalescent Models
p2distanceWelfare's Synthetic Indicator
p3state.msmAnalyzing survival data
paPerformance Attribution for Equity Portfolios
PAactivPALSummarize Daily Physical Activity from 'activPAL' Accelerometer Data
PabonLassoPabon Lasso Graphs and Comparing Situations of a Unit in Two Different Times
PACPartition-Assisted Clustering
PACBOClustering Online Datasets
pacbpredPAC-Bayesian Estimation and Prediction in Sparse Additive Models
packConvert values to/from raw vectors
packagetrackrTrack R Package Downloads from RStudio's CRAN Mirror
packcirclesCircle Packing
packClassicToy example of Pack Classic
packHVA few Useful Functions for Statisticians
packratA Dependency Management System for Projects and their R Package Dependencies
packS4Toy Example of S4 Package
pacmanPackage Management Tool
pacoProcrustes Application to Cophylogenetic Analysis
pactPredictive Analysis of Clinical Trials
PACVBVariational Bayes (VB) Approximation of Gibbs Posteriors with Hinge Losses
PadePadé Approximant Coefficients
pafAttributable Fraction Function for Censored Survival Data
PAFitNonparametric Estimation of Preferential Attachment and Node Fitness in Temporal Complex Networks
pagenumPut Page Numbers on Graphics
pageviewsAn API Client for Wikimedia Traffic Data
PAGIThe package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways
PAGWASPathway Analysis Methods for Genomewide Association Data
pairedCIConfidence intervals for the ratio of locations and for the ratio of scales of two paired samples
PairedDataPaired Data Analysis
pairheatmapA tool for comparing heatmaps
pairsD3D3 Scatterplot Matrices
PairVizVisualization using Eulerian tours and Hamiltonian decompositions
pairwiseRasch Model Parameters by Pairwise Algorithm
pairwiseCIConfidence Intervals for Two Sample Comparisons
palaeoSigSignificance Tests for Palaeoenvironmental Reconstructions
paleobioDBDownload and Process Data from the Paleobiology Database
paleofireAnalysis of Charcoal Records from the Global Charcoal Database
paleoMASPaleoecological Analysis
paleotreePaleontological and Phylogenetic Analyses of Evolution
paleoTSAnalyze Paleontological Time-Series
palettetownUse Pokemon Inspired Colour Palettes
palinsolInsolation for Palaeoclimate Studies
palrColour Palettes for Data
pamctdpPrincipal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns
pammPower Analysis for Random Effects in Mixed Models
pampeImplementation of the Panel Data Approach Method for Program Evaluation
pamrPam: prediction analysis for microarrays
panMultiple Imputation for Multivariate Panel or Clustered Data
pAnalysisBenchmarking and Rescaling R2 using Noise Percentile Analysis
PANDAPreferential Attachment Based Common Neighbor Distribution Derived Functional Associations
panderAn R Pandoc Writer
pandocfiltersPandoc Filters for R
panelaggregationAggregate Longitudinal Survey Data
panelAREstimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation
PanelCountRandom Effects and/or Sample Selection Models for Panel Count Data
PaneldataLinear models for panel data
pangaearClient for the 'Pangaea' Database
PANICrPANIC Tests of Nonstationarity
papayarView Medical Research Images using the Papaya JavaScript Library
papeRA Toolbox for Writing Pretty Papers and Reports
ParallelForestRandom Forest Classification with Parallel Computing
parallelize.dynamicAutomate parallelization of function calls by means of dynamic code analysis
parallelMapUnified Interface to Parallelization Back-Ends
parallelMCMCcombineMethods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set
parallelMLA Parallel-Voting Algorithm for many Classifiers
ParallelPCParalellised Versions of Constraint Based Causal Discovery Algorithms
parallelSVMA Parallel-Voting Version of the Support-Vector-Machine Algorithm
ParallelTreeParallel Tree
paramGUIA Shiny GUI for some Parameter Estimation Examples
ParamHelpersHelpers for Parameters in Black-Box Optimization, Tuning and Machine Learning
paramlinkParametric Linkage Analysis in R
paramsSimplify Parameters
paranHorn's Test of Principal Components/Factors
parboostDistributed Model-Based Boosting
parcorRegularized estimation of partial correlation matrices
ParDNAcopyParallel implementation of the "segment" function of package "DNAcopy"
ParentOffspringConduct the Parent-Offspring Test Using Monomorphic SNP Markers
ParetoPosStableComputing, Fitting and Validating the PPS Distribution
parfmParametric Frailty Models
parfossilParallelized functions for palaeoecological and palaeogeographical analysis
parmaPortfolio Allocation and Risk Management Applications
parmigeneParallel Mutual Information estimation for Gene Network reconstruction
PARSEModel-Based Clustering with Regularization Methods for High-Dimensional Data
parsecPartial Orders in Socio-Economics
parsedateRecognize and Parse Dates in Various Formats, Including All ISO 8601 Formats
partDSAPartitioning Using Deletion, Substitution, and Addition Moves
partialARPartial Autoregression
partialORPartial Odds Ratio
partitionMapPartition Maps
partitionMetricCompute a distance metric between two partitions of a set
partitionsAdditive Partitions of Integers
partoolsTools for the 'Parallel' Package
partsmPeriodic Autoregressive Time Series Models
partyA Laboratory for Recursive Partytioning
partykitA Toolkit for Recursive Partytioning
PASPolygenic Analysis System (PAS)
PashaPreprocessing of Aligned Sequences from HTS Analyses
passPrediction and Stability Selection of Tuning Parameters
passwordCreate Random Passwords
pastecsPackage for Analysis of Space-Time Ecological Series
pastisPhylogenetic Assembly with Soft Taxonomic Inferences
PASWR2Probability and Statistics with R, Second Edition
patchDVIPackage to Patch .dvi or .synctex Files
patchPlotScatterplots of image patches
patchSynctexCommunication Between Editor and Viewer for Literate Programs
PATHChangeA Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison
pathClassClassification using biological pathways as prior knowledge
pathdiagramBasic functions for drawing path diagrams
pathmoxPathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling
pathologicalPath Manipulation Utilities
PathSelectMPBackwards Variable Selection for Paths using M Plus
patPROVisualizing Temporal Microbiome Data
PatternClassClass-focused pattern metric comparisons using simulation
pauwels2014Bayesian Experimental Design for Systems Biology
pavoPerceptual Analysis, Visualization and Organization of Spectral Color Data in R
pawaccPhysical activity with accelerometers
PAWLImplementation of the PAWL algorithm
pbapplyAdding Progress Bar to '*apply' Functions
PBDProtracted Birth-Death Model of Diversification
pbdBASEProgramming with Big Data – Base Wrappers for Distributed Matrices
pbdDEMOProgramming with Big Data – Demonstrations and Examples Using 'pbdR' Packages
pbdDMATProgramming with Big Data – Distributed Matrix Methods
pbdMPIProgramming with Big Data – Interface to MPI
pbdNCDF4Programming with Big Data – Interface to Parallel Unidata NetCDF4 Format Data Files
pbdPROFProgramming with Big Data — MPI Profiling Tools
pbdSLAPProgramming with Big Data – Scalable Linear Algebra Packages
pbdZMQProgramming with Big Data – Interface to ZeroMQ
PBImiscA Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych'
pbivnormVectorized Bivariate Normal CDF
pbkrtestParametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison
pbmcapplyTracking the Progress of Mc*pply with Progress Bar
pboProbability of Backtest Overfitting
pBracketsPlot Brackets
pbsPeriodic B Splines
PBSadmbADMB for R Using Scripts or GUI
PBSddesolveSolver for Delay Differential Equations
PBSmappingMapping Fisheries Data and Spatial Analysis Tools
PBSmodellingGUI Tools Made Easy: Interact with Models and Explore Data
pca3dThree Dimensional PCA Plots
PCA4TSSegmenting Multiple Time Series by Contemporaneous Linear Transformation
pcaBootPlotCreate 2D Principal Component Plots with Bootstrapping
pcadaptFast Principal Component Analysis for Outlier Detection
pcaL1Three L1-Norm PCA Methods
pcalgMethods for Graphical Models and Causal Inference
PCAmixdataMultivariate Analysis of Mixed Data
pcaPPRobust PCA by Projection Pursuit
PCDSplineSemiparametric regression analysis of panel count data using monotone splines
pcevPrincipal Component of Explained Variance
pcgPreconditioned Conjugate Gradient Algorithm for solving Ax=b
PCGSEPrincipal Component Gene Set Enrichment
pchPiecewise Constant Hazards Models for Censored and Truncated Data
PCICtImplementation of POSIXct work-alike for 365 and 360 day calendars
pcIRTIRT Models for Polytomous and Continuous Item Responses
PCITPartial Correlation Coefficient with Information Theory
pcnetmetaPatient-Centered Network Meta-Analysis
pcoPanel Cointegration Tests
PCovRPrincipal Covariates Regression
PCPSPrincipal Coordinates of Phylogenetic Structure
pcrsimSimulation of the Forensic DNA Process
PCSCalculate the probability of correct selection (PCS)
pcsePanel-Corrected Standard Error Estimation in R
pdcPermutation Distribution Clustering
pdfClusterCluster analysis via nonparametric density estimation
pdfetchFetch Economic and Financial Time Series Data from Public Sources
pdftablesProgrammatic Conversion of PDF Tables
pdftoolsExtract Text and Data from PDF Documents
pdistPartitioned Distance Function
pdmodProximal/distal modeling framework for Pavlovian conditioning phenomena
pdolsmsPanel Dynamic OLS Estimation of Cointegrating Vectors
PDQutilsPDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations
pdRThreshold Model and Unit Root Tests in Panel Data
PDSCEPositive definite sparse covariance estimators
Peacock.testTwo and Three Dimensional Kolmogorov-Smirnov Two-Sample Tests
peacotsPeriodogram Peaks in Correlated Time Series
peakPickPeak Picking Methods Inspired by Biological Data
pearPackage for Periodic Autoregression Analysis
pearson7Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2
PearsonDSPearson Distribution System
PearsonICAIndependent component analysis using score functions from the Pearson system
pecPrediction Error Curves for Risk Prediction Models in Survival Analysis
pedanticsFunctions to facilitate power and sensitivity analyses for genetic studies of natural populations
PedCNVAn implementation for association analysis with CNV data
pedgeneGene-Level Statistics for Pedigree Data
pedigreePedigree functions
pedigreemmPedigree-based mixed-effects models
pedometricsPedometric Tools and Techniques
pegasPopulation and Evolutionary Genetics Analysis System
PEIPGeophysical Inverse Theory and Optimization
PEMMA Penalized EM algorithm incorporating missing-data mechanism
pems.utilsPortable Emissions (and Other Mobile) Measurement System Utilities
penalizedL1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model
penalizedLDAPenalized Classification using Fisher's Linear Discriminant
penalizedSVMFeature Selection SVM using penalty functions
pencopulaFlexible Copula Density Estimation with Penalized Hierarchical B-Splines
PenCoxFrailRegularization in Cox Frailty Models
pendensityDensity Estimation with a Penalized Mixture Approach
penDvineFlexible Pair-Copula Estimation in D-Vines using Bivariate Penalized Splines
penMSMEstimating Regularized Multi-state Models Using L1 Penalties
pensimSimulation of high-dimensional data and parallelized repeated penalized regression
peperrParallelised Estimation of Prediction Error
peplibPeptide Library Analysis Methods
PepPrepInsilico peptide mutation, digestion and homologous comparison
peptiderEvaluation of Diversity in Nucleotide Libraries
PeptidesCalculate Indices and Theoretical Properties of Protein Sequences
pequodModerated Regression Package
perARMAPeriodic Time Series Analysis
PercUsing Percolation and Conductance to Find Information Flow Certainty in a Direct Network
perccalImplementing Double Bootstrap Linear Regression Confidence Intervals Using the 'perc-cal' Method
PerFitPerson Fit
PerfMeasPerfMeas: Performance Measures for ranking and classification tasks
PerformanceAnalyticsEconometric tools for performance and risk analysis
performanceEstimationAn Infra-Structure for P